Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05220

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05215 and MMP_RS05220 are separated by 331 nucleotidesMMP_RS05220 and MMP_RS05225 are separated by 24 nucleotides MMP_RS05215: MMP_RS05215 - indole-3-glycerol phosphate synthase TrpC, at 992,021 to 992,710 _RS05215 MMP_RS05220: MMP_RS05220 - dihydroorotase, at 993,042 to 994,298 _RS05220 MMP_RS05225: MMP_RS05225 - RluA family pseudouridine synthase, at 994,323 to 995,216 _RS05225 Position (kb) 993 994 995Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 992.540 kb on + strandat 992.541 kb on - strandat 992.573 kb on - strandat 992.740 kb on + strandat 992.740 kb on + strandat 992.813 kb on - strandat 992.813 kb on - strandat 992.813 kb on - strandat 992.813 kb on - strandat 992.814 kb on + strandat 992.814 kb on + strandat 992.871 kb on - strandat 992.951 kb on + strandat 992.965 kb on - strandat 992.986 kb on + strandat 993.025 kb on + strandat 993.046 kb on + strandat 993.048 kb on - strandat 993.050 kb on - strandat 993.051 kb on + strandat 993.051 kb on + strandat 993.052 kb on - strandat 993.052 kb on - strandat 993.052 kb on - strandat 993.052 kb on - strandat 993.053 kb on + strandat 993.053 kb on + strandat 993.053 kb on + strandat 993.054 kb on - strandat 993.055 kb on + strandat 993.185 kb on - strandat 993.212 kb on - strandat 993.260 kb on + strandat 993.260 kb on + strandat 993.726 kb on + strandat 993.744 kb on + strandat 993.747 kb on - strandat 993.892 kb on - strandat 994.352 kb on - strandat 994.353 kb on + strandat 994.374 kb on + strandat 994.439 kb on - strand, within MMP_RS05225at 994.439 kb on - strand, within MMP_RS05225at 994.451 kb on - strand, within MMP_RS05225at 994.451 kb on - strand, within MMP_RS05225at 994.485 kb on + strand, within MMP_RS05225at 994.504 kb on + strand, within MMP_RS05225at 994.536 kb on + strand, within MMP_RS05225at 994.539 kb on - strand, within MMP_RS05225at 994.539 kb on - strand, within MMP_RS05225at 994.539 kb on - strand, within MMP_RS05225at 994.540 kb on + strand, within MMP_RS05225at 994.588 kb on - strand, within MMP_RS05225at 994.592 kb on - strand, within MMP_RS05225at 994.699 kb on + strand, within MMP_RS05225at 994.709 kb on - strand, within MMP_RS05225at 994.709 kb on - strand, within MMP_RS05225at 994.710 kb on + strand, within MMP_RS05225at 994.712 kb on + strand, within MMP_RS05225at 994.712 kb on + strand, within MMP_RS05225at 994.712 kb on + strand, within MMP_RS05225at 994.713 kb on - strand, within MMP_RS05225at 994.765 kb on - strand, within MMP_RS05225at 994.766 kb on + strand, within MMP_RS05225at 994.932 kb on + strand, within MMP_RS05225at 994.960 kb on - strand, within MMP_RS05225at 994.971 kb on - strand, within MMP_RS05225at 994.972 kb on + strand, within MMP_RS05225at 995.218 kb on - strandat 995.219 kb on + strandat 995.219 kb on + strandat 995.259 kb on - strandat 995.274 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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992,540 + -3.0
992,541 - -1.2
992,573 - -0.3
992,740 + -2.6
992,740 + -5.1
992,813 - -1.5
992,813 - -1.4
992,813 - -0.6
992,813 - -1.0
992,814 + -4.2
992,814 + -1.7
992,871 - -2.9
992,951 + +0.8
992,965 - -1.2
992,986 + -2.5
993,025 + -2.5
993,046 + -1.5
993,048 - -1.7
993,050 - -1.2
993,051 + -0.6
993,051 + +1.1
993,052 - +0.9
993,052 - -0.1
993,052 - -0.3
993,052 - +0.6
993,053 + +0.2
993,053 + -0.5
993,053 + +0.8
993,054 - +0.1
993,055 + +0.2
993,185 - -2.7
993,212 - -3.0
993,260 + -1.4
993,260 + -3.0
993,726 + -3.0
993,744 + -2.5
993,747 - -2.5
993,892 - -2.0
994,352 - +0.1
994,353 + +0.9
994,374 + +0.5
994,439 - MMP_RS05225 0.13 +0.4
994,439 - MMP_RS05225 0.13 -0.3
994,451 - MMP_RS05225 0.14 +1.2
994,451 - MMP_RS05225 0.14 +1.0
994,485 + MMP_RS05225 0.18 +0.5
994,504 + MMP_RS05225 0.20 +0.8
994,536 + MMP_RS05225 0.24 +1.3
994,539 - MMP_RS05225 0.24 +0.7
994,539 - MMP_RS05225 0.24 -0.3
994,539 - MMP_RS05225 0.24 +0.2
994,540 + MMP_RS05225 0.24 +0.6
994,588 - MMP_RS05225 0.30 +1.0
994,592 - MMP_RS05225 0.30 +0.6
994,699 + MMP_RS05225 0.42 +0.1
994,709 - MMP_RS05225 0.43 -0.7
994,709 - MMP_RS05225 0.43 -0.7
994,710 + MMP_RS05225 0.43 -0.5
994,712 + MMP_RS05225 0.44 -0.4
994,712 + MMP_RS05225 0.44 -0.7
994,712 + MMP_RS05225 0.44 -1.0
994,713 - MMP_RS05225 0.44 +0.2
994,765 - MMP_RS05225 0.49 +1.4
994,766 + MMP_RS05225 0.50 -0.2
994,932 + MMP_RS05225 0.68 -0.1
994,960 - MMP_RS05225 0.71 -0.2
994,971 - MMP_RS05225 0.72 -0.8
994,972 + MMP_RS05225 0.73 +0.1
995,218 - -0.9
995,219 + +0.4
995,219 + +0.3
995,259 - +0.8
995,274 - +0.2

Or see this region's nucleotide sequence