Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05215

Experiment: H2 N-free with 10mM L-Aspartic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS05205 and MMP_RS05210 overlap by 8 nucleotidesMMP_RS05210 and MMP_RS05215 overlap by 1 nucleotidesMMP_RS05215 and MMP_RS05220 are separated by 331 nucleotides MMP_RS05205: MMP_RS05205 - anthranilate synthase component I, at 989,744 to 991,063 _RS05205 MMP_RS05210: MMP_RS05210 - anthranilate phosphoribosyltransferase, at 991,056 to 992,021 _RS05210 MMP_RS05215: MMP_RS05215 - indole-3-glycerol phosphate synthase TrpC, at 992,021 to 992,710 _RS05215 MMP_RS05220: MMP_RS05220 - dihydroorotase, at 993,042 to 994,298 _RS05220 Position (kb) 992 993Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 991.085 kb on - strandat 991.160 kb on - strandat 991.393 kb on + strandat 991.523 kb on - strandat 991.634 kb on - strandat 992.540 kb on + strandat 992.541 kb on - strandat 992.573 kb on - strandat 992.740 kb on + strandat 992.740 kb on + strandat 992.813 kb on - strandat 992.813 kb on - strandat 992.813 kb on - strandat 992.813 kb on - strandat 992.814 kb on + strandat 992.814 kb on + strandat 992.871 kb on - strandat 992.951 kb on + strandat 992.965 kb on - strandat 992.986 kb on + strandat 993.025 kb on + strandat 993.046 kb on + strandat 993.048 kb on - strandat 993.050 kb on - strandat 993.051 kb on + strandat 993.051 kb on + strandat 993.052 kb on - strandat 993.052 kb on - strandat 993.052 kb on - strandat 993.052 kb on - strandat 993.053 kb on + strandat 993.053 kb on + strandat 993.053 kb on + strandat 993.054 kb on - strandat 993.055 kb on + strandat 993.185 kb on - strandat 993.212 kb on - strandat 993.260 kb on + strandat 993.260 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
remove
991,085 - -3.3
991,160 - -2.2
991,393 + -3.2
991,523 - -2.6
991,634 - +0.4
992,540 + -3.0
992,541 - -1.2
992,573 - -0.3
992,740 + -2.6
992,740 + -5.1
992,813 - -1.5
992,813 - -1.4
992,813 - -0.6
992,813 - -1.0
992,814 + -4.2
992,814 + -1.7
992,871 - -2.9
992,951 + +0.8
992,965 - -1.2
992,986 + -2.5
993,025 + -2.5
993,046 + -1.5
993,048 - -1.7
993,050 - -1.2
993,051 + -0.6
993,051 + +1.1
993,052 - +0.9
993,052 - -0.1
993,052 - -0.3
993,052 - +0.6
993,053 + +0.2
993,053 + -0.5
993,053 + +0.8
993,054 - +0.1
993,055 + +0.2
993,185 - -2.7
993,212 - -3.0
993,260 + -1.4
993,260 + -3.0

Or see this region's nucleotide sequence