Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05190

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05180 and MMP_RS05185 are separated by 26 nucleotidesMMP_RS05185 and MMP_RS05190 are separated by 0 nucleotidesMMP_RS05190 and MMP_RS05195 overlap by 11 nucleotidesMMP_RS05195 and MMP_RS05200 are separated by 9 nucleotides MMP_RS05180: MMP_RS05180 - Nre family DNA repair protein, at 985,324 to 986,544 _RS05180 MMP_RS05185: MMP_RS05185 - tryptophan synthase subunit alpha, at 986,571 to 987,347 _RS05185 MMP_RS05190: MMP_RS05190 - tryptophan synthase subunit beta, at 987,348 to 988,532 _RS05190 MMP_RS05195: MMP_RS05195 - phosphoribosylanthranilate isomerase, at 988,522 to 989,157 _RS05195 MMP_RS05200: MMP_RS05200 - aminodeoxychorismate/anthranilate synthase component II, at 989,167 to 989,763 _RS05200 Position (kb) 987 988 989Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 986.533 kb on + strandat 986.572 kb on - strandat 986.632 kb on + strandat 986.679 kb on - strandat 987.015 kb on + strandat 987.183 kb on - strandat 987.644 kb on + strandat 987.682 kb on - strandat 987.683 kb on + strandat 987.975 kb on - strandat 988.549 kb on - strandat 988.637 kb on + strandat 988.930 kb on - strandat 988.934 kb on - strandat 989.192 kb on - strandat 989.193 kb on + strandat 989.451 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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986,533 + -0.2
986,572 - +0.1
986,632 + -1.3
986,679 - -3.3
987,015 + -2.3
987,183 - -3.2
987,644 + -1.7
987,682 - -1.0
987,683 + -3.0
987,975 - -2.4
988,549 - -0.4
988,637 + -4.5
988,930 - -2.4
988,934 - -1.4
989,192 - -0.7
989,193 + -3.4
989,451 - -1.7

Or see this region's nucleotide sequence