Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05180 and MMP_RS05185 are separated by 26 nucleotides MMP_RS05185 and MMP_RS05190 are separated by 0 nucleotides
MMP_RS05180: MMP_RS05180 - Nre family DNA repair protein, at 985,324 to 986,544
_RS05180
MMP_RS05185: MMP_RS05185 - tryptophan synthase subunit alpha, at 986,571 to 987,347
_RS05185
MMP_RS05190: MMP_RS05190 - tryptophan synthase subunit beta, at 987,348 to 988,532
_RS05190
Position (kb) 986
987
988 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 985.801 kb on + strand, within MMP_RS05180 at 985.852 kb on - strand, within MMP_RS05180 at 985.852 kb on - strand, within MMP_RS05180 at 985.921 kb on - strand, within MMP_RS05180 at 985.924 kb on - strand, within MMP_RS05180 at 985.925 kb on + strand, within MMP_RS05180 at 985.925 kb on + strand, within MMP_RS05180 at 985.994 kb on - strand, within MMP_RS05180 at 986.075 kb on + strand, within MMP_RS05180 at 986.097 kb on - strand, within MMP_RS05180 at 986.101 kb on - strand, within MMP_RS05180 at 986.102 kb on + strand, within MMP_RS05180 at 986.128 kb on - strand, within MMP_RS05180 at 986.270 kb on - strand, within MMP_RS05180 at 986.321 kb on - strand, within MMP_RS05180 at 986.321 kb on - strand, within MMP_RS05180 at 986.533 kb on + strand at 986.572 kb on - strand at 986.632 kb on + strand at 986.679 kb on - strand at 987.015 kb on + strand at 987.183 kb on - strand at 987.644 kb on + strand at 987.682 kb on - strand at 987.683 kb on + strand at 987.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 985,801 + MMP_RS05180 0.39 +0.6 985,852 - MMP_RS05180 0.43 +0.8 985,852 - MMP_RS05180 0.43 -1.0 985,921 - MMP_RS05180 0.49 +0.4 985,924 - MMP_RS05180 0.49 -0.2 985,925 + MMP_RS05180 0.49 +0.5 985,925 + MMP_RS05180 0.49 +0.2 985,994 - MMP_RS05180 0.55 +0.4 986,075 + MMP_RS05180 0.62 +0.1 986,097 - MMP_RS05180 0.63 -0.6 986,101 - MMP_RS05180 0.64 -0.0 986,102 + MMP_RS05180 0.64 -0.6 986,128 - MMP_RS05180 0.66 +0.3 986,270 - MMP_RS05180 0.77 -0.4 986,321 - MMP_RS05180 0.82 +1.0 986,321 - MMP_RS05180 0.82 +0.4 986,533 + -0.2 986,572 - +0.1 986,632 + -1.3 986,679 - -3.3 987,015 + -2.3 987,183 - -3.2 987,644 + -1.7 987,682 - -1.0 987,683 + -3.0 987,975 - -2.4
Or see this region's nucleotide sequence