Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05120

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05115 and MMP_RS05120 are separated by 143 nucleotidesMMP_RS05120 and MMP_RS05125 are separated by 328 nucleotides MMP_RS05115: MMP_RS05115 - 50S ribosomal protein L11 methyltransferase, at 974,237 to 975,124 _RS05115 MMP_RS05120: MMP_RS05120 - DNA topoisomerase VI subunit B, at 975,268 to 977,262 _RS05120 MMP_RS05125: MMP_RS05125 - D-aminoacyl-tRNA deacylase, at 977,591 to 978,355 _RS05125 Position (kb) 975 976 977 978Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 974.365 kb on - strand, within MMP_RS05115at 974.413 kb on - strand, within MMP_RS05115at 974.413 kb on - strand, within MMP_RS05115at 974.413 kb on - strand, within MMP_RS05115at 974.413 kb on - strand, within MMP_RS05115at 974.414 kb on + strand, within MMP_RS05115at 974.415 kb on - strand, within MMP_RS05115at 974.416 kb on + strand, within MMP_RS05115at 974.416 kb on + strand, within MMP_RS05115at 974.416 kb on + strand, within MMP_RS05115at 974.416 kb on + strand, within MMP_RS05115at 974.417 kb on - strand, within MMP_RS05115at 974.417 kb on - strand, within MMP_RS05115at 974.417 kb on - strand, within MMP_RS05115at 974.417 kb on - strand, within MMP_RS05115at 974.418 kb on + strand, within MMP_RS05115at 974.418 kb on + strand, within MMP_RS05115at 974.418 kb on + strand, within MMP_RS05115at 974.420 kb on + strand, within MMP_RS05115at 974.623 kb on - strand, within MMP_RS05115at 974.649 kb on + strand, within MMP_RS05115at 974.936 kb on + strand, within MMP_RS05115at 974.970 kb on + strand, within MMP_RS05115at 974.970 kb on + strand, within MMP_RS05115at 975.037 kb on - strandat 975.237 kb on - strandat 975.273 kb on - strandat 975.522 kb on - strandat 975.742 kb on - strandat 976.121 kb on - strandat 976.307 kb on - strandat 976.318 kb on - strandat 976.353 kb on + strandat 976.415 kb on + strandat 976.422 kb on + strandat 976.579 kb on - strandat 976.703 kb on - strandat 977.280 kb on - strandat 977.283 kb on + strandat 977.287 kb on - strandat 977.371 kb on - strandat 977.371 kb on - strandat 977.372 kb on + strandat 977.372 kb on + strandat 977.372 kb on + strandat 977.384 kb on + strandat 977.385 kb on - strandat 977.385 kb on - strandat 977.385 kb on - strandat 977.386 kb on + strandat 977.386 kb on + strandat 977.386 kb on + strandat 977.387 kb on - strandat 977.387 kb on - strandat 977.387 kb on - strandat 977.388 kb on + strandat 977.388 kb on + strandat 977.388 kb on + strandat 977.389 kb on - strandat 977.425 kb on + strandat 977.427 kb on - strandat 977.436 kb on - strandat 977.450 kb on + strandat 977.503 kb on - strandat 977.527 kb on - strandat 977.528 kb on + strandat 977.529 kb on - strandat 977.530 kb on + strandat 977.534 kb on + strandat 977.604 kb on - strandat 977.673 kb on - strand, within MMP_RS05125at 977.673 kb on - strand, within MMP_RS05125at 977.708 kb on - strand, within MMP_RS05125at 977.735 kb on - strand, within MMP_RS05125at 977.736 kb on + strand, within MMP_RS05125at 977.736 kb on + strand, within MMP_RS05125at 977.736 kb on + strand, within MMP_RS05125at 977.736 kb on + strand, within MMP_RS05125at 977.737 kb on - strand, within MMP_RS05125at 977.739 kb on - strand, within MMP_RS05125at 977.740 kb on + strand, within MMP_RS05125at 977.740 kb on + strand, within MMP_RS05125at 977.787 kb on - strand, within MMP_RS05125at 977.788 kb on + strand, within MMP_RS05125at 977.791 kb on - strand, within MMP_RS05125at 977.791 kb on - strand, within MMP_RS05125at 977.791 kb on - strand, within MMP_RS05125at 977.792 kb on + strand, within MMP_RS05125at 977.952 kb on - strand, within MMP_RS05125at 978.072 kb on - strand, within MMP_RS05125at 978.137 kb on - strand, within MMP_RS05125at 978.193 kb on + strand, within MMP_RS05125at 978.214 kb on + strand, within MMP_RS05125at 978.224 kb on + strand, within MMP_RS05125

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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974,365 - MMP_RS05115 0.14 +0.1
974,413 - MMP_RS05115 0.20 -0.2
974,413 - MMP_RS05115 0.20 +0.6
974,413 - MMP_RS05115 0.20 +0.2
974,413 - MMP_RS05115 0.20 +1.0
974,414 + MMP_RS05115 0.20 -0.3
974,415 - MMP_RS05115 0.20 -0.0
974,416 + MMP_RS05115 0.20 -0.2
974,416 + MMP_RS05115 0.20 +1.2
974,416 + MMP_RS05115 0.20 +0.8
974,416 + MMP_RS05115 0.20 +0.9
974,417 - MMP_RS05115 0.20 -0.4
974,417 - MMP_RS05115 0.20 -1.2
974,417 - MMP_RS05115 0.20 +0.0
974,417 - MMP_RS05115 0.20 -0.2
974,418 + MMP_RS05115 0.20 -0.6
974,418 + MMP_RS05115 0.20 -0.4
974,418 + MMP_RS05115 0.20 +1.1
974,420 + MMP_RS05115 0.21 -0.4
974,623 - MMP_RS05115 0.43 +0.1
974,649 + MMP_RS05115 0.46 -1.5
974,936 + MMP_RS05115 0.79 -0.4
974,970 + MMP_RS05115 0.83 +1.0
974,970 + MMP_RS05115 0.83 +0.3
975,037 - +0.8
975,237 - -0.8
975,273 - -0.3
975,522 - -2.3
975,742 - -1.3
976,121 - -4.4
976,307 - -4.5
976,318 - -2.7
976,353 + -3.0
976,415 + -2.4
976,422 + -3.4
976,579 - -2.5
976,703 - -1.8
977,280 - -1.8
977,283 + -1.2
977,287 - -3.8
977,371 - -0.5
977,371 - +0.9
977,372 + -0.6
977,372 + +1.2
977,372 + -0.4
977,384 + +0.6
977,385 - -1.7
977,385 - -0.2
977,385 - -2.2
977,386 + -0.6
977,386 + -0.0
977,386 + +2.7
977,387 - +0.5
977,387 - +0.6
977,387 - -0.8
977,388 + -0.8
977,388 + -0.9
977,388 + -0.2
977,389 - +0.6
977,425 + +0.8
977,427 - -0.2
977,436 - +1.0
977,450 + -1.4
977,503 - -0.8
977,527 - +0.2
977,528 + -1.8
977,529 - +0.1
977,530 + +0.3
977,534 + +1.4
977,604 - -0.1
977,673 - MMP_RS05125 0.11 +0.2
977,673 - MMP_RS05125 0.11 -0.3
977,708 - MMP_RS05125 0.15 +0.4
977,735 - MMP_RS05125 0.19 -0.3
977,736 + MMP_RS05125 0.19 +0.8
977,736 + MMP_RS05125 0.19 -0.0
977,736 + MMP_RS05125 0.19 +0.1
977,736 + MMP_RS05125 0.19 -0.2
977,737 - MMP_RS05125 0.19 -1.6
977,739 - MMP_RS05125 0.19 +0.4
977,740 + MMP_RS05125 0.19 -0.4
977,740 + MMP_RS05125 0.19 -1.2
977,787 - MMP_RS05125 0.26 -0.0
977,788 + MMP_RS05125 0.26 -1.2
977,791 - MMP_RS05125 0.26 +0.6
977,791 - MMP_RS05125 0.26 -0.6
977,791 - MMP_RS05125 0.26 +0.0
977,792 + MMP_RS05125 0.26 -0.2
977,952 - MMP_RS05125 0.47 +0.9
978,072 - MMP_RS05125 0.63 -0.2
978,137 - MMP_RS05125 0.71 -0.7
978,193 + MMP_RS05125 0.79 +0.5
978,214 + MMP_RS05125 0.81 +0.0
978,224 + MMP_RS05125 0.83 +0.1

Or see this region's nucleotide sequence