Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05005

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04995 and MMP_RS05000 are separated by 49 nucleotidesMMP_RS05000 and MMP_RS05005 are separated by 86 nucleotidesMMP_RS05005 and MMP_RS05010 are separated by 256 nucleotidesMMP_RS05010 and MMP_RS05015 are separated by 18 nucleotides MMP_RS04995: MMP_RS04995 - hypothetical protein, at 952,202 to 952,459 _RS04995 MMP_RS05000: MMP_RS05000 - FmdE family protein, at 952,509 to 953,087 _RS05000 MMP_RS05005: MMP_RS05005 - uroporphyrinogen-III C-methyltransferase, at 953,174 to 953,893 _RS05005 MMP_RS05010: MMP_RS05010 - KEOPS complex subunit Cgi121, at 954,150 to 954,581 _RS05010 MMP_RS05015: MMP_RS05015 - histidinol dehydrogenase, at 954,600 to 955,874 _RS05015 Position (kb) 953 954Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 952.176 kb on + strandat 952.176 kb on + strandat 952.180 kb on + strandat 952.199 kb on + strandat 952.318 kb on - strand, within MMP_RS04995at 952.319 kb on + strand, within MMP_RS04995at 952.375 kb on - strand, within MMP_RS04995at 952.387 kb on + strand, within MMP_RS04995at 952.392 kb on + strand, within MMP_RS04995at 952.392 kb on + strand, within MMP_RS04995at 952.393 kb on - strand, within MMP_RS04995at 952.393 kb on - strand, within MMP_RS04995at 952.393 kb on - strand, within MMP_RS04995at 952.394 kb on + strand, within MMP_RS04995at 952.394 kb on + strand, within MMP_RS04995at 952.394 kb on + strand, within MMP_RS04995at 952.394 kb on + strand, within MMP_RS04995at 952.394 kb on + strand, within MMP_RS04995at 952.394 kb on + strand, within MMP_RS04995at 952.394 kb on + strand, within MMP_RS04995at 952.430 kb on - strand, within MMP_RS04995at 952.436 kb on - strandat 952.436 kb on - strandat 952.456 kb on + strandat 952.487 kb on - strandat 952.501 kb on - strandat 952.510 kb on - strandat 952.546 kb on + strandat 952.559 kb on - strandat 952.560 kb on + strandat 952.580 kb on - strand, within MMP_RS05000at 952.659 kb on - strand, within MMP_RS05000at 952.659 kb on - strand, within MMP_RS05000at 952.704 kb on + strand, within MMP_RS05000at 952.855 kb on - strand, within MMP_RS05000at 952.934 kb on - strand, within MMP_RS05000at 952.934 kb on - strand, within MMP_RS05000at 952.934 kb on - strand, within MMP_RS05000at 952.938 kb on + strand, within MMP_RS05000at 952.938 kb on + strand, within MMP_RS05000at 952.947 kb on + strand, within MMP_RS05000at 952.957 kb on + strand, within MMP_RS05000at 953.005 kb on - strand, within MMP_RS05000at 953.005 kb on - strand, within MMP_RS05000at 953.006 kb on + strand, within MMP_RS05000at 953.031 kb on + strandat 953.109 kb on - strandat 953.121 kb on - strandat 953.121 kb on - strandat 953.121 kb on - strandat 953.142 kb on - strandat 953.143 kb on + strandat 953.160 kb on + strandat 953.175 kb on - strandat 953.175 kb on - strandat 953.186 kb on - strandat 953.186 kb on - strandat 953.187 kb on + strandat 953.187 kb on + strandat 953.206 kb on - strandat 953.393 kb on - strandat 953.393 kb on - strandat 953.574 kb on + strandat 953.588 kb on - strandat 953.924 kb on - strandat 953.925 kb on + strandat 953.925 kb on + strandat 953.934 kb on - strandat 953.934 kb on - strandat 953.935 kb on + strandat 953.963 kb on + strandat 953.967 kb on + strandat 953.968 kb on - strandat 953.969 kb on + strandat 953.988 kb on - strandat 953.988 kb on - strandat 953.989 kb on + strandat 954.022 kb on + strandat 954.046 kb on + strandat 954.049 kb on - strandat 954.050 kb on + strandat 954.050 kb on + strandat 954.052 kb on + strandat 954.061 kb on - strandat 954.069 kb on - strandat 954.069 kb on - strandat 954.071 kb on - strandat 954.074 kb on - strandat 954.080 kb on + strandat 954.138 kb on + strandat 954.157 kb on - strandat 954.268 kb on - strandat 954.269 kb on + strandat 954.271 kb on + strandat 954.294 kb on + strandat 954.322 kb on - strandat 954.650 kb on + strandat 954.791 kb on + strandat 954.839 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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952,176 + -0.9
952,176 + -0.3
952,180 + +0.6
952,199 + -1.7
952,318 - MMP_RS04995 0.45 +0.2
952,319 + MMP_RS04995 0.45 +2.3
952,375 - MMP_RS04995 0.67 -0.3
952,387 + MMP_RS04995 0.72 -0.4
952,392 + MMP_RS04995 0.74 -0.5
952,392 + MMP_RS04995 0.74 +0.3
952,393 - MMP_RS04995 0.74 +0.3
952,393 - MMP_RS04995 0.74 +0.1
952,393 - MMP_RS04995 0.74 -0.7
952,394 + MMP_RS04995 0.74 +0.5
952,394 + MMP_RS04995 0.74 +1.0
952,394 + MMP_RS04995 0.74 +0.2
952,394 + MMP_RS04995 0.74 +0.4
952,394 + MMP_RS04995 0.74 -0.3
952,394 + MMP_RS04995 0.74 +0.4
952,394 + MMP_RS04995 0.74 +0.1
952,430 - MMP_RS04995 0.88 +0.6
952,436 - -0.2
952,436 - +0.3
952,456 + +1.6
952,487 - +0.3
952,501 - +1.2
952,510 - -0.3
952,546 + -1.8
952,559 - -1.0
952,560 + +0.9
952,580 - MMP_RS05000 0.12 -0.1
952,659 - MMP_RS05000 0.26 +0.0
952,659 - MMP_RS05000 0.26 -0.9
952,704 + MMP_RS05000 0.34 -1.8
952,855 - MMP_RS05000 0.60 +0.1
952,934 - MMP_RS05000 0.73 +0.1
952,934 - MMP_RS05000 0.73 -0.1
952,934 - MMP_RS05000 0.73 -0.8
952,938 + MMP_RS05000 0.74 -0.6
952,938 + MMP_RS05000 0.74 -0.3
952,947 + MMP_RS05000 0.76 -1.3
952,957 + MMP_RS05000 0.77 -0.3
953,005 - MMP_RS05000 0.86 -0.0
953,005 - MMP_RS05000 0.86 -1.4
953,006 + MMP_RS05000 0.86 -0.2
953,031 + -0.0
953,109 - -0.1
953,121 - -1.7
953,121 - +0.3
953,121 - +0.2
953,142 - -0.5
953,143 + +0.0
953,160 + +0.6
953,175 - +1.2
953,175 - -0.9
953,186 - -0.8
953,186 - -0.7
953,187 + -0.1
953,187 + -3.0
953,206 - -3.6
953,393 - -2.6
953,393 - -2.1
953,574 + +0.0
953,588 - -1.7
953,924 - -1.5
953,925 + -2.1
953,925 + -2.6
953,934 - -0.5
953,934 - -1.1
953,935 + -4.0
953,963 + -0.3
953,967 + -2.4
953,968 - +0.7
953,969 + -0.0
953,988 - +0.2
953,988 - -0.3
953,989 + +0.2
954,022 + +1.0
954,046 + +0.4
954,049 - +0.1
954,050 + -0.4
954,050 + -1.5
954,052 + -1.4
954,061 - -1.9
954,069 - -2.6
954,069 - -2.4
954,071 - -2.6
954,074 - -3.3
954,080 + -0.2
954,138 + -1.5
954,157 - -2.8
954,268 - -2.3
954,269 + -2.4
954,271 + -2.6
954,294 + -0.7
954,322 - -2.5
954,650 + -2.0
954,791 + -3.0
954,839 + -3.6

Or see this region's nucleotide sequence