Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04935

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04930 and MMP_RS04935 are separated by 92 nucleotidesMMP_RS04935 and MMP_RS04940 are separated by 142 nucleotides MMP_RS04930: MMP_RS04930 - adenosylcobinamide-phosphate synthase CbiB, at 939,228 to 940,148 _RS04930 MMP_RS04935: MMP_RS04935 - translation initiation factor IF-5A, at 940,241 to 940,636 _RS04935 MMP_RS04940: MMP_RS04940 - precorrin-3B C(17)-methyltransferase, at 940,779 to 941,531 _RS04940 Position (kb) 940 941Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 939.311 kb on + strandat 939.406 kb on - strandat 939.413 kb on + strandat 939.461 kb on + strandat 939.579 kb on + strandat 939.692 kb on - strandat 939.721 kb on + strandat 939.814 kb on + strandat 939.846 kb on + strandat 939.892 kb on - strandat 940.128 kb on - strandat 940.129 kb on + strandat 940.131 kb on + strandat 940.135 kb on - strandat 940.146 kb on - strandat 940.147 kb on + strandat 940.185 kb on + strandat 940.214 kb on + strandat 940.214 kb on + strandat 940.229 kb on - strandat 940.229 kb on - strandat 940.296 kb on + strandat 940.587 kb on - strandat 940.600 kb on - strandat 940.671 kb on - strandat 940.676 kb on + strandat 940.695 kb on + strandat 940.696 kb on - strandat 940.697 kb on + strandat 940.698 kb on - strandat 940.698 kb on - strandat 940.698 kb on - strandat 940.698 kb on - strandat 940.699 kb on + strandat 940.704 kb on + strandat 940.704 kb on + strandat 940.737 kb on + strandat 940.737 kb on + strandat 940.742 kb on - strandat 940.746 kb on + strandat 940.747 kb on - strandat 940.747 kb on - strandat 940.747 kb on - strandat 940.747 kb on - strandat 940.747 kb on - strandat 940.748 kb on + strandat 940.748 kb on + strandat 940.748 kb on + strandat 940.748 kb on + strandat 940.749 kb on - strandat 940.749 kb on - strandat 940.749 kb on - strandat 940.749 kb on - strandat 940.749 kb on - strandat 940.749 kb on - strandat 940.750 kb on + strandat 940.750 kb on + strandat 940.751 kb on - strandat 940.751 kb on - strandat 940.751 kb on - strandat 940.752 kb on + strandat 940.752 kb on + strandat 940.752 kb on + strandat 940.754 kb on + strandat 940.762 kb on + strandat 940.769 kb on - strandat 940.787 kb on + strandat 940.796 kb on - strandat 940.796 kb on - strandat 940.797 kb on + strandat 940.797 kb on + strandat 940.797 kb on + strandat 940.797 kb on + strandat 940.798 kb on - strandat 940.798 kb on - strandat 940.820 kb on - strandat 940.839 kb on + strandat 940.865 kb on - strandat 940.886 kb on - strandat 940.897 kb on + strandat 940.901 kb on - strandat 941.003 kb on + strandat 941.188 kb on + strandat 941.188 kb on + strandat 941.188 kb on + strandat 941.223 kb on - strandat 941.290 kb on - strandat 941.290 kb on - strandat 941.290 kb on - strandat 941.291 kb on + strandat 941.292 kb on - strandat 941.292 kb on - strandat 941.292 kb on - strandat 941.293 kb on + strandat 941.293 kb on + strandat 941.293 kb on + strandat 941.293 kb on + strandat 941.293 kb on + strandat 941.293 kb on + strandat 941.346 kb on - strandat 941.376 kb on + strandat 941.419 kb on - strandat 941.420 kb on + strandat 941.448 kb on - strandat 941.457 kb on + strandat 941.524 kb on - strandat 941.524 kb on - strandat 941.524 kb on - strandat 941.554 kb on - strandat 941.580 kb on - strandat 941.584 kb on - strandat 941.590 kb on - strandat 941.591 kb on + strandat 941.591 kb on + strandat 941.591 kb on + strandat 941.592 kb on - strandat 941.593 kb on + strandat 941.598 kb on - strandat 941.598 kb on - strandat 941.599 kb on + strandat 941.606 kb on + strandat 941.618 kb on - strandat 941.619 kb on + strandat 941.619 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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939,311 + -0.9
939,406 - -3.7
939,413 + -1.8
939,461 + -2.3
939,579 + -4.4
939,692 - -3.1
939,721 + -2.7
939,814 + -4.3
939,846 + -4.1
939,892 - -5.3
940,128 - -0.5
940,129 + -1.5
940,131 + -1.1
940,135 - -1.9
940,146 - +0.8
940,147 + +0.3
940,185 + +0.7
940,214 + -0.6
940,214 + -0.3
940,229 - -0.6
940,229 - +0.7
940,296 + -5.2
940,587 - -2.5
940,600 - -3.3
940,671 - -3.0
940,676 + -2.7
940,695 + -1.4
940,696 - -1.0
940,697 + -2.6
940,698 - -2.9
940,698 - -1.1
940,698 - -3.3
940,698 - -2.2
940,699 + -1.4
940,704 + +0.8
940,704 + -0.5
940,737 + -2.2
940,737 + -0.8
940,742 - -2.6
940,746 + -1.4
940,747 - -1.3
940,747 - -2.3
940,747 - -0.2
940,747 - -1.2
940,747 - -2.2
940,748 + -0.7
940,748 + -1.3
940,748 + -0.7
940,748 + -1.0
940,749 - -0.0
940,749 - +0.3
940,749 - +0.3
940,749 - +0.7
940,749 - -0.1
940,749 - -0.8
940,750 + -1.1
940,750 + +0.1
940,751 - -0.1
940,751 - -0.1
940,751 - -0.1
940,752 + +0.3
940,752 + +0.5
940,752 + -2.1
940,754 + -0.1
940,762 + -0.6
940,769 - +0.1
940,787 + +0.1
940,796 - +0.6
940,796 - -0.2
940,797 + +0.0
940,797 + -1.1
940,797 + +0.1
940,797 + -0.1
940,798 - -3.0
940,798 - -2.4
940,820 - -4.3
940,839 + -3.7
940,865 - -3.5
940,886 - -4.3
940,897 + -2.3
940,901 - -4.8
941,003 + -4.4
941,188 + -1.8
941,188 + -2.5
941,188 + -4.3
941,223 - -2.6
941,290 - -3.2
941,290 - -5.3
941,290 - -2.1
941,291 + -1.2
941,292 - -3.1
941,292 - -2.3
941,292 - -2.7
941,293 + -2.6
941,293 + -1.8
941,293 + -2.8
941,293 + -2.5
941,293 + -3.0
941,293 + -2.1
941,346 - -2.3
941,376 + -3.5
941,419 - -1.4
941,420 + -2.4
941,448 - -2.7
941,457 + -2.8
941,524 - -3.0
941,524 - -2.3
941,524 - -3.2
941,554 - -2.5
941,580 - -3.8
941,584 - -2.9
941,590 - -2.1
941,591 + -3.3
941,591 + -4.9
941,591 + -4.4
941,592 - -2.7
941,593 + -3.2
941,598 - +1.3
941,598 - +0.3
941,599 + +0.0
941,606 + -0.6
941,618 - +0.2
941,619 + -0.0
941,619 + -0.2

Or see this region's nucleotide sequence