Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04910 and MMP_RS04915 are separated by 281 nucleotides MMP_RS04915 and MMP_RS04920 are separated by 57 nucleotides MMP_RS04920 and MMP_RS04925 are separated by 12 nucleotides
MMP_RS04910: MMP_RS04910 - ATP phosphoribosyltransferase, at 934,878 to 935,744
_RS04910
MMP_RS04915: MMP_RS04915 - UPF0058 family protein, at 936,026 to 936,382
_RS04915
MMP_RS04920: MMP_RS04920 - CCA tRNA nucleotidyltransferase, at 936,440 to 937,774
_RS04920
MMP_RS04925: MMP_RS04925 - DUF530 family protein, at 937,787 to 939,217
_RS04925
Position (kb) 936
937
938 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 935.533 kb on + strand at 935.659 kb on + strand at 935.659 kb on + strand at 935.721 kb on + strand at 935.790 kb on - strand at 935.797 kb on - strand at 935.797 kb on - strand at 935.797 kb on - strand at 935.809 kb on - strand at 935.827 kb on - strand at 935.828 kb on + strand at 935.832 kb on + strand at 935.832 kb on + strand at 935.853 kb on + strand at 935.855 kb on + strand at 935.855 kb on + strand at 935.855 kb on + strand at 935.855 kb on + strand at 935.855 kb on + strand at 935.855 kb on + strand at 935.864 kb on - strand at 935.866 kb on - strand at 935.866 kb on - strand at 935.866 kb on - strand at 935.867 kb on + strand at 935.874 kb on - strand at 935.874 kb on - strand at 935.874 kb on - strand at 935.874 kb on - strand at 935.874 kb on - strand at 935.875 kb on + strand at 935.875 kb on + strand at 935.875 kb on + strand at 935.875 kb on + strand at 935.875 kb on + strand at 935.875 kb on + strand at 935.875 kb on - strand at 935.877 kb on - strand at 935.877 kb on - strand at 935.877 kb on - strand at 935.878 kb on + strand at 935.878 kb on + strand at 935.879 kb on - strand at 935.879 kb on - strand at 935.879 kb on - strand at 935.879 kb on - strand at 935.880 kb on + strand at 935.880 kb on + strand at 935.880 kb on + strand at 935.880 kb on + strand at 935.881 kb on - strand at 935.881 kb on - strand at 935.882 kb on + strand at 935.882 kb on + strand at 935.882 kb on + strand at 935.886 kb on - strand at 935.891 kb on + strand at 935.906 kb on - strand at 935.907 kb on + strand at 935.911 kb on + strand at 935.931 kb on + strand at 935.970 kb on - strand at 935.971 kb on + strand at 935.976 kb on - strand at 935.977 kb on + strand at 935.977 kb on + strand at 935.977 kb on + strand at 935.979 kb on - strand at 935.990 kb on + strand at 935.994 kb on - strand at 936.138 kb on - strand at 936.139 kb on + strand at 936.284 kb on - strand at 936.405 kb on + strand at 936.529 kb on + strand at 936.727 kb on + strand at 936.727 kb on + strand at 937.116 kb on + strand at 937.209 kb on - strand at 937.311 kb on - strand at 937.370 kb on + strand at 937.383 kb on - strand at 937.423 kb on - strand at 937.556 kb on - strand at 937.557 kb on + strand at 937.662 kb on - strand at 937.666 kb on + strand at 937.702 kb on - strand at 937.702 kb on - strand at 937.703 kb on + strand at 937.704 kb on - strand at 937.715 kb on + strand at 937.718 kb on - strand at 937.723 kb on + strand at 937.749 kb on - strand at 937.753 kb on - strand at 937.885 kb on - strand at 937.980 kb on + strand at 937.983 kb on - strand at 937.984 kb on + strand at 938.106 kb on - strand at 938.193 kb on + strand at 938.484 kb on - strand at 938.485 kb on + strand at 938.485 kb on + strand at 938.561 kb on + strand at 938.561 kb on + strand at 938.631 kb on - strand at 938.632 kb on + strand at 938.701 kb on - strand at 938.768 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 935,533 + -1.3 935,659 + -2.4 935,659 + -3.7 935,721 + -3.9 935,790 - -1.7 935,797 - -4.3 935,797 - -4.9 935,797 - -3.0 935,809 - -1.8 935,827 - -0.4 935,828 + -1.3 935,832 + -2.1 935,832 + -4.4 935,853 + +0.7 935,855 + +1.5 935,855 + +1.4 935,855 + +0.7 935,855 + +0.0 935,855 + -0.5 935,855 + -0.8 935,864 - +0.8 935,866 - -0.1 935,866 - +0.9 935,866 - +0.2 935,867 + +0.4 935,874 - -0.5 935,874 - -0.9 935,874 - +0.0 935,874 - +1.0 935,874 - +0.3 935,875 + -0.2 935,875 + +0.4 935,875 + -0.3 935,875 + -0.2 935,875 + -1.1 935,875 + +0.9 935,875 - -0.0 935,877 - -0.4 935,877 - +0.3 935,877 - -0.0 935,878 + +0.6 935,878 + -0.3 935,879 - +0.1 935,879 - +0.7 935,879 - -0.7 935,879 - -0.2 935,880 + +0.1 935,880 + +0.8 935,880 + -0.9 935,880 + +0.5 935,881 - -0.5 935,881 - -1.3 935,882 + +1.4 935,882 + +0.7 935,882 + +0.4 935,886 - -1.2 935,891 + +0.0 935,906 - +0.1 935,907 + -0.7 935,911 + -0.7 935,931 + +0.5 935,970 - -0.1 935,971 + -2.2 935,976 - -3.2 935,977 + -4.7 935,977 + -3.2 935,977 + -5.2 935,979 - -5.2 935,990 + -4.5 935,994 - -2.3 936,138 - -2.0 936,139 + -0.2 936,284 - -2.8 936,405 + +0.4 936,529 + -2.3 936,727 + -0.2 936,727 + -2.3 937,116 + -2.4 937,209 - -0.5 937,311 - +0.1 937,370 + -1.9 937,383 - -1.9 937,423 - -2.2 937,556 - -1.7 937,557 + -4.1 937,662 - -2.9 937,666 + -2.3 937,702 - -4.0 937,702 - -2.3 937,703 + -2.8 937,704 - -2.2 937,715 + -3.2 937,718 - -1.6 937,723 + -1.2 937,749 - -0.8 937,753 - -1.8 937,885 - -3.3 937,980 + -1.8 937,983 - -1.3 937,984 + -3.5 938,106 - -4.6 938,193 + -1.5 938,484 - -3.6 938,485 + +0.4 938,485 + -3.9 938,561 + -5.5 938,561 + -1.5 938,631 - -3.8 938,632 + -2.3 938,701 - -3.3 938,768 + -2.4
Or see this region's nucleotide sequence