Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04905 and MMP_RS04910 are separated by 182 nucleotides MMP_RS04910 and MMP_RS04915 are separated by 281 nucleotides MMP_RS04915 and MMP_RS04920 are separated by 57 nucleotides
MMP_RS04905: MMP_RS04905 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB, at 933,286 to 934,695
_RS04905
MMP_RS04910: MMP_RS04910 - ATP phosphoribosyltransferase, at 934,878 to 935,744
_RS04910
MMP_RS04915: MMP_RS04915 - UPF0058 family protein, at 936,026 to 936,382
_RS04915
MMP_RS04920: MMP_RS04920 - CCA tRNA nucleotidyltransferase, at 936,440 to 937,774
_RS04920
Position (kb) 934
935
936 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 933.923 kb on - strand at 934.138 kb on - strand at 934.138 kb on - strand at 934.174 kb on - strand at 934.293 kb on + strand at 934.517 kb on + strand at 934.564 kb on + strand at 934.789 kb on - strand at 934.816 kb on + strand at 934.818 kb on + strand at 934.837 kb on - strand at 934.837 kb on - strand at 934.838 kb on + strand at 934.842 kb on + strand at 934.884 kb on - strand at 934.953 kb on - strand at 935.111 kb on + strand at 935.111 kb on + strand at 935.375 kb on - strand at 935.533 kb on + strand at 935.659 kb on + strand at 935.659 kb on + strand at 935.721 kb on + strand at 935.790 kb on - strand at 935.797 kb on - strand at 935.797 kb on - strand at 935.797 kb on - strand at 935.809 kb on - strand at 935.827 kb on - strand at 935.828 kb on + strand at 935.832 kb on + strand at 935.832 kb on + strand at 935.853 kb on + strand at 935.855 kb on + strand at 935.855 kb on + strand at 935.855 kb on + strand at 935.855 kb on + strand at 935.855 kb on + strand at 935.855 kb on + strand at 935.864 kb on - strand at 935.866 kb on - strand at 935.866 kb on - strand at 935.866 kb on - strand at 935.867 kb on + strand at 935.874 kb on - strand at 935.874 kb on - strand at 935.874 kb on - strand at 935.874 kb on - strand at 935.874 kb on - strand at 935.875 kb on + strand at 935.875 kb on + strand at 935.875 kb on + strand at 935.875 kb on + strand at 935.875 kb on + strand at 935.875 kb on + strand at 935.875 kb on - strand at 935.877 kb on - strand at 935.877 kb on - strand at 935.877 kb on - strand at 935.878 kb on + strand at 935.878 kb on + strand at 935.879 kb on - strand at 935.879 kb on - strand at 935.879 kb on - strand at 935.879 kb on - strand at 935.880 kb on + strand at 935.880 kb on + strand at 935.880 kb on + strand at 935.880 kb on + strand at 935.881 kb on - strand at 935.881 kb on - strand at 935.882 kb on + strand at 935.882 kb on + strand at 935.882 kb on + strand at 935.886 kb on - strand at 935.891 kb on + strand at 935.906 kb on - strand at 935.907 kb on + strand at 935.911 kb on + strand at 935.931 kb on + strand at 935.970 kb on - strand at 935.971 kb on + strand at 935.976 kb on - strand at 935.977 kb on + strand at 935.977 kb on + strand at 935.977 kb on + strand at 935.979 kb on - strand at 935.990 kb on + strand at 935.994 kb on - strand at 936.138 kb on - strand at 936.139 kb on + strand at 936.284 kb on - strand at 936.405 kb on + strand at 936.529 kb on + strand at 936.727 kb on + strand at 936.727 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 933,923 - -4.3 934,138 - +0.8 934,138 - -0.2 934,174 - -2.3 934,293 + -4.0 934,517 + -2.5 934,564 + -2.8 934,789 - -2.8 934,816 + -0.1 934,818 + +0.4 934,837 - -0.7 934,837 - +0.3 934,838 + -0.1 934,842 + -0.4 934,884 - -0.1 934,953 - -3.3 935,111 + -2.1 935,111 + -1.7 935,375 - -2.5 935,533 + -1.3 935,659 + -2.4 935,659 + -3.7 935,721 + -3.9 935,790 - -1.7 935,797 - -4.3 935,797 - -4.9 935,797 - -3.0 935,809 - -1.8 935,827 - -0.4 935,828 + -1.3 935,832 + -2.1 935,832 + -4.4 935,853 + +0.7 935,855 + +1.5 935,855 + +1.4 935,855 + +0.7 935,855 + +0.0 935,855 + -0.5 935,855 + -0.8 935,864 - +0.8 935,866 - -0.1 935,866 - +0.9 935,866 - +0.2 935,867 + +0.4 935,874 - -0.5 935,874 - -0.9 935,874 - +0.0 935,874 - +1.0 935,874 - +0.3 935,875 + -0.2 935,875 + +0.4 935,875 + -0.3 935,875 + -0.2 935,875 + -1.1 935,875 + +0.9 935,875 - -0.0 935,877 - -0.4 935,877 - +0.3 935,877 - -0.0 935,878 + +0.6 935,878 + -0.3 935,879 - +0.1 935,879 - +0.7 935,879 - -0.7 935,879 - -0.2 935,880 + +0.1 935,880 + +0.8 935,880 + -0.9 935,880 + +0.5 935,881 - -0.5 935,881 - -1.3 935,882 + +1.4 935,882 + +0.7 935,882 + +0.4 935,886 - -1.2 935,891 + +0.0 935,906 - +0.1 935,907 + -0.7 935,911 + -0.7 935,931 + +0.5 935,970 - -0.1 935,971 + -2.2 935,976 - -3.2 935,977 + -4.7 935,977 + -3.2 935,977 + -5.2 935,979 - -5.2 935,990 + -4.5 935,994 - -2.3 936,138 - -2.0 936,139 + -0.2 936,284 - -2.8 936,405 + +0.4 936,529 + -2.3 936,727 + -0.2 936,727 + -2.3
Or see this region's nucleotide sequence