Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04905

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04900 and MMP_RS04905 are separated by 44 nucleotidesMMP_RS04905 and MMP_RS04910 are separated by 182 nucleotides MMP_RS04900: MMP_RS04900 - hypothetical protein, at 931,400 to 933,241 _RS04900 MMP_RS04905: MMP_RS04905 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB, at 933,286 to 934,695 _RS04905 MMP_RS04910: MMP_RS04910 - ATP phosphoribosyltransferase, at 934,878 to 935,744 _RS04910 Position (kb) 933 934 935Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 932.287 kb on - strand, within MMP_RS04900at 932.287 kb on - strand, within MMP_RS04900at 932.343 kb on - strand, within MMP_RS04900at 932.396 kb on - strand, within MMP_RS04900at 932.397 kb on + strand, within MMP_RS04900at 932.397 kb on + strand, within MMP_RS04900at 932.420 kb on + strand, within MMP_RS04900at 932.503 kb on + strand, within MMP_RS04900at 932.535 kb on - strand, within MMP_RS04900at 932.536 kb on + strand, within MMP_RS04900at 932.536 kb on + strand, within MMP_RS04900at 932.571 kb on - strand, within MMP_RS04900at 932.571 kb on - strand, within MMP_RS04900at 932.571 kb on - strand, within MMP_RS04900at 932.571 kb on - strand, within MMP_RS04900at 932.572 kb on + strand, within MMP_RS04900at 932.590 kb on - strand, within MMP_RS04900at 932.591 kb on + strand, within MMP_RS04900at 932.591 kb on + strand, within MMP_RS04900at 932.624 kb on + strand, within MMP_RS04900at 932.659 kb on - strand, within MMP_RS04900at 932.671 kb on - strand, within MMP_RS04900at 932.671 kb on - strand, within MMP_RS04900at 932.671 kb on - strand, within MMP_RS04900at 932.672 kb on + strand, within MMP_RS04900at 932.717 kb on + strand, within MMP_RS04900at 932.717 kb on + strand, within MMP_RS04900at 932.717 kb on + strand, within MMP_RS04900at 932.790 kb on + strand, within MMP_RS04900at 932.821 kb on + strand, within MMP_RS04900at 932.846 kb on - strand, within MMP_RS04900at 932.918 kb on + strand, within MMP_RS04900at 932.937 kb on - strand, within MMP_RS04900at 932.937 kb on - strand, within MMP_RS04900at 932.938 kb on + strand, within MMP_RS04900at 932.938 kb on + strand, within MMP_RS04900at 932.938 kb on + strand, within MMP_RS04900at 932.941 kb on - strand, within MMP_RS04900at 932.941 kb on - strand, within MMP_RS04900at 932.942 kb on + strand, within MMP_RS04900at 932.942 kb on + strand, within MMP_RS04900at 932.951 kb on + strand, within MMP_RS04900at 932.971 kb on + strand, within MMP_RS04900at 932.985 kb on - strand, within MMP_RS04900at 933.004 kb on - strand, within MMP_RS04900at 933.010 kb on + strand, within MMP_RS04900at 933.023 kb on + strand, within MMP_RS04900at 933.102 kb on - strandat 933.176 kb on - strandat 933.177 kb on + strandat 933.179 kb on + strandat 933.179 kb on + strandat 933.180 kb on - strandat 933.181 kb on + strandat 933.239 kb on - strandat 933.249 kb on + strandat 933.280 kb on - strandat 933.528 kb on - strandat 933.779 kb on + strandat 933.923 kb on - strandat 934.138 kb on - strandat 934.138 kb on - strandat 934.174 kb on - strandat 934.293 kb on + strandat 934.517 kb on + strandat 934.564 kb on + strandat 934.789 kb on - strandat 934.816 kb on + strandat 934.818 kb on + strandat 934.837 kb on - strandat 934.837 kb on - strandat 934.838 kb on + strandat 934.842 kb on + strandat 934.884 kb on - strandat 934.953 kb on - strandat 935.111 kb on + strandat 935.111 kb on + strandat 935.375 kb on - strandat 935.533 kb on + strandat 935.659 kb on + strandat 935.659 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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932,287 - MMP_RS04900 0.48 -2.4
932,287 - MMP_RS04900 0.48 -3.2
932,343 - MMP_RS04900 0.51 -3.6
932,396 - MMP_RS04900 0.54 -3.2
932,397 + MMP_RS04900 0.54 -2.9
932,397 + MMP_RS04900 0.54 -2.8
932,420 + MMP_RS04900 0.55 -3.9
932,503 + MMP_RS04900 0.60 -3.1
932,535 - MMP_RS04900 0.62 -1.8
932,536 + MMP_RS04900 0.62 -0.9
932,536 + MMP_RS04900 0.62 +0.2
932,571 - MMP_RS04900 0.64 -2.5
932,571 - MMP_RS04900 0.64 -3.4
932,571 - MMP_RS04900 0.64 -1.4
932,571 - MMP_RS04900 0.64 -2.2
932,572 + MMP_RS04900 0.64 -3.6
932,590 - MMP_RS04900 0.65 -1.9
932,591 + MMP_RS04900 0.65 -3.8
932,591 + MMP_RS04900 0.65 -1.6
932,624 + MMP_RS04900 0.66 -3.1
932,659 - MMP_RS04900 0.68 -3.0
932,671 - MMP_RS04900 0.69 -3.1
932,671 - MMP_RS04900 0.69 -2.0
932,671 - MMP_RS04900 0.69 -3.3
932,672 + MMP_RS04900 0.69 -1.3
932,717 + MMP_RS04900 0.71 -2.2
932,717 + MMP_RS04900 0.71 -0.2
932,717 + MMP_RS04900 0.71 -3.0
932,790 + MMP_RS04900 0.75 -1.4
932,821 + MMP_RS04900 0.77 -2.1
932,846 - MMP_RS04900 0.79 -1.6
932,918 + MMP_RS04900 0.82 -3.6
932,937 - MMP_RS04900 0.83 -1.9
932,937 - MMP_RS04900 0.83 -0.9
932,938 + MMP_RS04900 0.83 -0.8
932,938 + MMP_RS04900 0.83 -4.0
932,938 + MMP_RS04900 0.83 -5.2
932,941 - MMP_RS04900 0.84 -2.4
932,941 - MMP_RS04900 0.84 -2.0
932,942 + MMP_RS04900 0.84 -3.1
932,942 + MMP_RS04900 0.84 -2.5
932,951 + MMP_RS04900 0.84 -2.0
932,971 + MMP_RS04900 0.85 -1.6
932,985 - MMP_RS04900 0.86 -3.1
933,004 - MMP_RS04900 0.87 -1.0
933,010 + MMP_RS04900 0.87 -3.1
933,023 + MMP_RS04900 0.88 -3.3
933,102 - -3.5
933,176 - -2.3
933,177 + -2.8
933,179 + -2.4
933,179 + -1.9
933,180 - -1.4
933,181 + -2.3
933,239 - +1.0
933,249 + +0.6
933,280 - -0.2
933,528 - -4.1
933,779 + -2.8
933,923 - -4.3
934,138 - +0.8
934,138 - -0.2
934,174 - -2.3
934,293 + -4.0
934,517 + -2.5
934,564 + -2.8
934,789 - -2.8
934,816 + -0.1
934,818 + +0.4
934,837 - -0.7
934,837 - +0.3
934,838 + -0.1
934,842 + -0.4
934,884 - -0.1
934,953 - -3.3
935,111 + -2.1
935,111 + -1.7
935,375 - -2.5
935,533 + -1.3
935,659 + -2.4
935,659 + -3.7

Or see this region's nucleotide sequence