Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04750 and MMP_RS04755 overlap by 4 nucleotides MMP_RS04755 and MMP_RS04760 are separated by 63 nucleotides MMP_RS04760 and MMP_RS04765 are separated by 45 nucleotides
MMP_RS04750: MMP_RS04750 - TIGR00454 family protein, at 904,980 to 905,588
_RS04750
MMP_RS04755: MMP_RS04755 - PRC-barrel domain-containing protein, at 905,585 to 905,833
_RS04755
MMP_RS04760: MMP_RS04760 - diaminopimelate epimerase, at 905,897 to 906,730
_RS04760
MMP_RS04765: MMP_RS04765 - asparagine synthase (glutamine-hydrolyzing), at 906,776 to 908,317
_RS04765
Position (kb)
905
906
907 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 904.926 kb on - strand at 904.945 kb on + strand at 904.946 kb on - strand at 904.948 kb on - strand at 904.948 kb on - strand at 904.948 kb on - strand at 904.948 kb on - strand at 904.949 kb on + strand at 904.959 kb on + strand at 905.116 kb on - strand at 905.117 kb on + strand at 905.119 kb on + strand at 905.180 kb on + strand at 905.190 kb on - strand at 905.204 kb on + strand at 905.209 kb on - strand at 905.209 kb on - strand at 905.210 kb on + strand at 905.232 kb on - strand at 905.233 kb on + strand at 905.246 kb on + strand at 905.327 kb on - strand at 905.333 kb on + strand at 905.410 kb on + strand at 905.442 kb on - strand at 905.447 kb on + strand at 905.463 kb on + strand at 905.464 kb on - strand at 905.506 kb on - strand at 905.511 kb on + strand at 905.520 kb on + strand at 905.535 kb on + strand at 905.570 kb on - strand at 905.615 kb on + strand at 905.623 kb on + strand at 905.623 kb on + strand at 905.642 kb on + strand at 905.701 kb on + strand at 905.729 kb on + strand at 905.729 kb on + strand at 905.751 kb on + strand at 905.751 kb on + strand at 905.786 kb on + strand at 905.800 kb on - strand at 905.831 kb on - strand at 905.874 kb on + strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.882 kb on - strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.883 kb on + strand at 905.884 kb on - strand at 905.884 kb on - strand at 905.885 kb on + strand at 905.923 kb on + strand at 905.933 kb on - strand at 905.935 kb on - strand at 905.939 kb on - strand at 905.939 kb on - strand at 905.940 kb on + strand at 905.944 kb on + strand at 906.199 kb on + strand at 906.348 kb on + strand at 906.387 kb on - strand at 906.392 kb on - strand at 906.392 kb on - strand at 906.392 kb on - strand at 906.392 kb on - strand at 906.392 kb on - strand at 906.393 kb on + strand at 906.405 kb on - strand at 906.430 kb on + strand at 906.680 kb on - strand at 906.680 kb on - strand at 906.681 kb on + strand at 906.742 kb on + strand at 906.758 kb on - strand at 906.798 kb on + strand at 906.820 kb on - strand at 906.821 kb on + strand at 906.861 kb on - strand at 906.862 kb on + strand at 906.922 kb on + strand at 907.090 kb on - strand at 907.221 kb on + strand at 907.322 kb on - strand at 907.330 kb on + strand at 907.404 kb on - strand at 907.506 kb on - strand at 907.507 kb on + strand at 907.507 kb on + strand at 907.545 kb on + strand at 907.587 kb on + strand at 907.675 kb on - strand at 907.676 kb on + strand at 907.706 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 904,926 - -0.0 904,945 + -0.4 904,946 - -3.0 904,948 - -1.6 904,948 - -3.6 904,948 - -4.3 904,948 - -1.2 904,949 + +2.1 904,959 + -3.0 905,116 - -4.5 905,117 + -1.2 905,119 + -1.9 905,180 + -4.3 905,190 - -3.3 905,204 + -3.4 905,209 - -2.4 905,209 - -3.7 905,210 + -1.8 905,232 - -2.9 905,233 + -3.9 905,246 + -5.0 905,327 - -0.1 905,333 + -3.2 905,410 + -2.1 905,442 - -3.3 905,447 + -2.1 905,463 + -4.2 905,464 - -4.6 905,506 - -3.3 905,511 + -3.3 905,520 + -2.5 905,535 + -3.1 905,570 - -3.2 905,615 + -1.5 905,623 + -2.6 905,623 + -1.3 905,642 + -2.9 905,701 + -1.6 905,729 + -3.9 905,729 + -3.7 905,751 + -4.8 905,751 + -4.6 905,786 + -4.5 905,800 - -2.7 905,831 - -1.7 905,874 + -1.4 905,882 - -2.9 905,882 - -2.2 905,882 - -3.1 905,882 - -2.3 905,882 - -3.3 905,882 - -4.8 905,882 - -1.8 905,882 - -3.5 905,883 + -2.4 905,883 + -2.1 905,883 + -1.4 905,883 + -1.5 905,883 + -1.2 905,883 + -0.8 905,884 - -3.0 905,884 - -2.4 905,885 + -1.9 905,923 + -2.7 905,933 - -4.4 905,935 - -4.1 905,939 - -1.7 905,939 - -1.5 905,940 + -5.8 905,944 + -3.6 906,199 + -4.6 906,348 + -1.3 906,387 - -3.1 906,392 - -2.1 906,392 - -5.2 906,392 - -1.5 906,392 - -2.5 906,392 - -3.9 906,393 + -1.7 906,405 - -3.5 906,430 + -4.1 906,680 - -3.5 906,680 - -2.0 906,681 + -2.8 906,742 + +0.4 906,758 - +0.7 906,798 + -0.2 906,820 - -1.8 906,821 + -2.3 906,861 - -1.1 906,862 + -3.3 906,922 + -0.9 907,090 - -3.5 907,221 + +0.1 907,322 - -2.4 907,330 + -4.3 907,404 - -1.8 907,506 - -2.4 907,507 + -4.3 907,507 + -2.0 907,545 + -0.7 907,587 + -2.9 907,675 - +0.6 907,676 + -2.9 907,706 + -1.3
Or see this region's nucleotide sequence