Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04560

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04555 and MMP_RS04560 are separated by 22 nucleotidesMMP_RS04560 and MMP_RS04565 are separated by 88 nucleotidesMMP_RS04565 and MMP_RS04570 are separated by 271 nucleotides MMP_RS04555: MMP_RS04555 - 7 8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG, at 869,522 to 870,580 _RS04555 MMP_RS04560: MMP_RS04560 - carboxylating nicotinate-nucleotide diphosphorylase, at 870,603 to 871,442 _RS04560 MMP_RS04565: MMP_RS04565 - ribonuclease P, at 871,531 to 871,923 _RS04565 MMP_RS04570: MMP_RS04570 - serine--tRNA ligase, at 872,195 to 873,739 _RS04570 Position (kb) 870 871 872Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 869.609 kb on + strandat 869.876 kb on + strandat 869.940 kb on + strandat 869.980 kb on - strandat 869.985 kb on + strandat 869.996 kb on + strandat 870.047 kb on + strandat 870.167 kb on - strandat 870.173 kb on + strandat 870.225 kb on + strandat 870.225 kb on + strandat 870.225 kb on + strandat 870.242 kb on - strandat 870.353 kb on + strandat 870.406 kb on - strandat 870.490 kb on - strandat 870.542 kb on + strandat 870.580 kb on - strandat 870.599 kb on - strandat 870.677 kb on - strandat 870.701 kb on - strandat 870.819 kb on - strandat 870.822 kb on - strandat 870.833 kb on - strandat 870.833 kb on - strandat 870.833 kb on - strandat 870.834 kb on + strandat 870.844 kb on + strandat 871.058 kb on - strandat 871.082 kb on - strandat 871.115 kb on - strandat 871.285 kb on + strandat 871.390 kb on + strandat 871.480 kb on - strandat 871.481 kb on + strandat 871.485 kb on + strandat 871.497 kb on + strandat 871.508 kb on + strandat 871.512 kb on - strandat 871.512 kb on - strandat 871.512 kb on - strandat 871.512 kb on - strandat 871.514 kb on - strandat 871.514 kb on - strandat 871.514 kb on - strandat 871.515 kb on + strandat 871.515 kb on + strandat 871.515 kb on + strandat 871.525 kb on - strandat 871.527 kb on - strandat 871.528 kb on + strandat 871.528 kb on + strandat 871.528 kb on + strandat 871.528 kb on + strandat 871.595 kb on + strandat 871.608 kb on + strandat 871.625 kb on - strandat 871.654 kb on - strandat 871.654 kb on - strandat 871.755 kb on + strandat 871.811 kb on - strandat 871.832 kb on - strandat 871.876 kb on - strandat 871.879 kb on - strandat 871.879 kb on - strandat 871.880 kb on + strandat 871.882 kb on + strandat 871.943 kb on - strandat 871.944 kb on + strandat 871.998 kb on - strandat 871.999 kb on + strandat 872.005 kb on + strandat 872.005 kb on + strandat 872.006 kb on - strandat 872.006 kb on - strandat 872.006 kb on - strandat 872.006 kb on - strandat 872.007 kb on + strandat 872.007 kb on + strandat 872.007 kb on + strandat 872.007 kb on + strandat 872.009 kb on - strandat 872.014 kb on - strandat 872.015 kb on + strandat 872.031 kb on + strandat 872.034 kb on - strandat 872.041 kb on - strandat 872.042 kb on + strandat 872.046 kb on - strandat 872.046 kb on - strandat 872.046 kb on - strandat 872.047 kb on + strandat 872.047 kb on + strandat 872.059 kb on - strandat 872.060 kb on + strandat 872.077 kb on - strandat 872.077 kb on - strandat 872.077 kb on - strandat 872.077 kb on - strandat 872.078 kb on + strandat 872.078 kb on + strandat 872.082 kb on + strandat 872.088 kb on - strandat 872.098 kb on - strandat 872.183 kb on + strandat 872.210 kb on - strandat 872.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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869,609 + -1.8
869,876 + -2.2
869,940 + -3.7
869,980 - -2.2
869,985 + -3.5
869,996 + -3.7
870,047 + -1.7
870,167 - -0.6
870,173 + -1.4
870,225 + -0.8
870,225 + -3.0
870,225 + -3.4
870,242 - -1.8
870,353 + -2.2
870,406 - -1.8
870,490 - -2.6
870,542 + -1.8
870,580 - -4.4
870,599 - +0.6
870,677 - -4.6
870,701 - -1.6
870,819 - -3.5
870,822 - -5.0
870,833 - -4.4
870,833 - -3.5
870,833 - -1.8
870,834 + -2.1
870,844 + -3.7
871,058 - -1.9
871,082 - -3.8
871,115 - -2.6
871,285 + -0.6
871,390 + -1.6
871,480 - -0.3
871,481 + -2.0
871,485 + -1.5
871,497 + -0.5
871,508 + -0.3
871,512 - -1.8
871,512 - -2.7
871,512 - -1.9
871,512 - -1.6
871,514 - -1.3
871,514 - -2.7
871,514 - -1.1
871,515 + -2.0
871,515 + -0.7
871,515 + -0.9
871,525 - -0.4
871,527 - -2.2
871,528 + -3.5
871,528 + -0.0
871,528 + -1.2
871,528 + -2.6
871,595 + -1.2
871,608 + -2.4
871,625 - -1.0
871,654 - -3.8
871,654 - -3.2
871,755 + -1.1
871,811 - -1.2
871,832 - -5.5
871,876 - -2.2
871,879 - -1.6
871,879 - -0.4
871,880 + -0.2
871,882 + -0.4
871,943 - +1.0
871,944 + +0.0
871,998 - -0.2
871,999 + -0.2
872,005 + -0.5
872,005 + -0.2
872,006 - -0.8
872,006 - -0.3
872,006 - +0.1
872,006 - -0.6
872,007 + -0.5
872,007 + -1.7
872,007 + -0.7
872,007 + +0.5
872,009 - +1.3
872,014 - +0.5
872,015 + -0.3
872,031 + +0.7
872,034 - -0.1
872,041 - -0.2
872,042 + -0.7
872,046 - -0.1
872,046 - -1.1
872,046 - +0.2
872,047 + +1.0
872,047 + -1.2
872,059 - -0.1
872,060 + +0.1
872,077 - +0.5
872,077 - +0.5
872,077 - -0.7
872,077 - +0.2
872,078 + +1.5
872,078 + -0.4
872,082 + -0.5
872,088 - -0.1
872,098 - -1.6
872,183 + -0.8
872,210 - -0.4
872,252 - -2.0

Or see this region's nucleotide sequence