Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04530 and MMP_RS04535 are separated by 120 nucleotides MMP_RS04535 and MMP_RS04540 are separated by 89 nucleotides
MMP_RS04530: MMP_RS04530 - ABC transporter permease, at 862,626 to 863,819
_RS04530
MMP_RS04535: MMP_RS04535 - hydroxymethylbilane synthase, at 863,940 to 864,854
_RS04535
MMP_RS04540: MMP_RS04540 - tetratricopeptide repeat protein, at 864,944 to 866,647
_RS04540
Position (kb) 863
864
865 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 862.976 kb on + strand, within MMP_RS04530 at 863.006 kb on + strand, within MMP_RS04530 at 863.263 kb on + strand, within MMP_RS04530 at 863.263 kb on + strand, within MMP_RS04530 at 863.267 kb on - strand, within MMP_RS04530 at 863.309 kb on + strand, within MMP_RS04530 at 863.510 kb on - strand, within MMP_RS04530 at 863.728 kb on - strand at 863.740 kb on - strand at 863.740 kb on - strand at 863.740 kb on - strand at 863.752 kb on - strand at 863.753 kb on + strand at 863.753 kb on + strand at 863.760 kb on - strand at 863.801 kb on - strand at 863.802 kb on + strand at 863.836 kb on + strand at 863.847 kb on + strand at 863.849 kb on - strand at 863.874 kb on + strand at 863.915 kb on + strand at 863.920 kb on + strand at 863.924 kb on + strand at 863.969 kb on - strand at 863.970 kb on + strand at 863.994 kb on - strand at 863.995 kb on + strand at 864.010 kb on - strand at 864.011 kb on + strand at 864.047 kb on - strand at 864.048 kb on + strand at 864.075 kb on + strand at 864.245 kb on + strand at 864.290 kb on + strand at 864.424 kb on - strand at 864.425 kb on + strand at 864.700 kb on - strand at 864.729 kb on + strand at 864.763 kb on - strand at 864.766 kb on - strand at 864.767 kb on + strand at 864.771 kb on + strand at 864.771 kb on + strand at 864.771 kb on + strand at 864.828 kb on + strand at 864.845 kb on - strand at 864.849 kb on - strand at 864.849 kb on - strand at 864.897 kb on - strand at 864.901 kb on - strand at 864.974 kb on - strand at 864.974 kb on - strand at 865.115 kb on - strand, within MMP_RS04540 at 865.115 kb on - strand, within MMP_RS04540 at 865.115 kb on - strand, within MMP_RS04540 at 865.348 kb on + strand, within MMP_RS04540 at 865.380 kb on - strand, within MMP_RS04540 at 865.380 kb on - strand, within MMP_RS04540 at 865.468 kb on - strand, within MMP_RS04540 at 865.469 kb on + strand, within MMP_RS04540 at 865.535 kb on - strand, within MMP_RS04540 at 865.536 kb on + strand, within MMP_RS04540 at 865.536 kb on + strand, within MMP_RS04540 at 865.651 kb on - strand, within MMP_RS04540 at 865.657 kb on + strand, within MMP_RS04540 at 865.719 kb on - strand, within MMP_RS04540 at 865.720 kb on + strand, within MMP_RS04540 at 865.726 kb on - strand, within MMP_RS04540 at 865.726 kb on - strand, within MMP_RS04540 at 865.814 kb on - strand, within MMP_RS04540 at 865.815 kb on + strand, within MMP_RS04540 at 865.833 kb on - strand, within MMP_RS04540 at 865.834 kb on + strand, within MMP_RS04540
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 862,976 + MMP_RS04530 0.29 -0.9 863,006 + MMP_RS04530 0.32 -0.8 863,263 + MMP_RS04530 0.53 +0.6 863,263 + MMP_RS04530 0.53 +0.1 863,267 - MMP_RS04530 0.54 +0.9 863,309 + MMP_RS04530 0.57 +0.2 863,510 - MMP_RS04530 0.74 +0.8 863,728 - +1.3 863,740 - +0.5 863,740 - +0.3 863,740 - -0.4 863,752 - +0.3 863,753 + +1.1 863,753 + +0.3 863,760 - -0.1 863,801 - +0.5 863,802 + +0.7 863,836 + +0.2 863,847 + -1.1 863,849 - +0.5 863,874 + +0.4 863,915 + -0.5 863,920 + -1.3 863,924 + -1.9 863,969 - -3.4 863,970 + -3.3 863,994 - -3.8 863,995 + +0.4 864,010 - -3.9 864,011 + -3.4 864,047 - -3.9 864,048 + -4.2 864,075 + -1.8 864,245 + -2.4 864,290 + -4.1 864,424 - -3.0 864,425 + -1.6 864,700 - -3.5 864,729 + -0.9 864,763 - +0.4 864,766 - -2.8 864,767 + -2.4 864,771 + -2.6 864,771 + -1.8 864,771 + -3.4 864,828 + +0.9 864,845 - -1.2 864,849 - -0.8 864,849 - -0.3 864,897 - +0.0 864,901 - +0.3 864,974 - -0.8 864,974 - -0.4 865,115 - MMP_RS04540 0.10 +0.3 865,115 - MMP_RS04540 0.10 -0.5 865,115 - MMP_RS04540 0.10 +0.2 865,348 + MMP_RS04540 0.24 +0.4 865,380 - MMP_RS04540 0.26 +1.3 865,380 - MMP_RS04540 0.26 -0.7 865,468 - MMP_RS04540 0.31 +0.1 865,469 + MMP_RS04540 0.31 +0.1 865,535 - MMP_RS04540 0.35 +0.7 865,536 + MMP_RS04540 0.35 -0.4 865,536 + MMP_RS04540 0.35 +0.2 865,651 - MMP_RS04540 0.41 -0.4 865,657 + MMP_RS04540 0.42 -0.8 865,719 - MMP_RS04540 0.45 -0.4 865,720 + MMP_RS04540 0.46 +0.1 865,726 - MMP_RS04540 0.46 +0.3 865,726 - MMP_RS04540 0.46 +0.2 865,814 - MMP_RS04540 0.51 +0.3 865,815 + MMP_RS04540 0.51 +0.2 865,833 - MMP_RS04540 0.52 -0.0 865,834 + MMP_RS04540 0.52 +0.1
Or see this region's nucleotide sequence