Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03650

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03645 and MMP_RS03650 are separated by 262 nucleotidesMMP_RS03650 and MMP_RS03655 are separated by 27 nucleotidesMMP_RS03655 and MMP_RS03660 are separated by 69 nucleotides MMP_RS03645: MMP_RS03645 - proline--tRNA ligase, at 684,942 to 686,324 _RS03645 MMP_RS03650: MMP_RS03650 - leucine--tRNA ligase, at 686,587 to 689,454 _RS03650 MMP_RS03655: MMP_RS03655 - DUF1894 domain-containing protein, at 689,482 to 689,799 _RS03655 MMP_RS03660: MMP_RS03660 - MATE family efflux transporter, at 689,869 to 691,212 _RS03660 Position (kb) 686 687 688 689 690Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 685.699 kb on - strandat 685.701 kb on - strandat 685.772 kb on + strandat 685.944 kb on - strandat 686.003 kb on + strandat 686.006 kb on + strandat 686.209 kb on - strandat 686.341 kb on + strandat 686.393 kb on + strandat 686.397 kb on - strandat 686.397 kb on - strandat 686.406 kb on - strandat 686.406 kb on - strandat 686.406 kb on - strandat 686.410 kb on - strandat 686.421 kb on - strandat 686.422 kb on + strandat 686.422 kb on + strandat 686.422 kb on + strandat 686.429 kb on - strandat 686.430 kb on + strandat 686.430 kb on + strandat 686.442 kb on - strandat 686.454 kb on + strandat 686.464 kb on + strandat 686.476 kb on - strandat 688.461 kb on + strandat 689.443 kb on - strandat 689.501 kb on + strandat 689.600 kb on - strand, within MMP_RS03655at 689.613 kb on + strand, within MMP_RS03655at 689.660 kb on + strand, within MMP_RS03655at 689.660 kb on + strand, within MMP_RS03655at 689.664 kb on + strand, within MMP_RS03655at 689.706 kb on - strand, within MMP_RS03655at 689.707 kb on + strand, within MMP_RS03655at 689.707 kb on + strand, within MMP_RS03655at 689.707 kb on + strand, within MMP_RS03655at 689.827 kb on + strandat 689.871 kb on + strandat 689.878 kb on - strandat 689.879 kb on + strandat 689.879 kb on + strandat 690.172 kb on - strand, within MMP_RS03660at 690.209 kb on + strand, within MMP_RS03660at 690.215 kb on + strand, within MMP_RS03660at 690.217 kb on + strand, within MMP_RS03660at 690.217 kb on + strand, within MMP_RS03660at 690.304 kb on + strand, within MMP_RS03660at 690.306 kb on + strand, within MMP_RS03660at 690.376 kb on + strand, within MMP_RS03660at 690.413 kb on - strand, within MMP_RS03660at 690.413 kb on - strand, within MMP_RS03660at 690.414 kb on + strand, within MMP_RS03660at 690.416 kb on + strand, within MMP_RS03660

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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685,699 - -3.0
685,701 - -1.2
685,772 + -4.0
685,944 - -2.2
686,003 + -2.2
686,006 + -1.2
686,209 - -1.9
686,341 + -3.9
686,393 + -3.2
686,397 - -2.7
686,397 - -2.4
686,406 - -1.7
686,406 - -3.0
686,406 - -2.0
686,410 - -2.1
686,421 - +0.8
686,422 + -0.5
686,422 + -3.7
686,422 + -2.5
686,429 - -3.8
686,430 + -4.2
686,430 + -2.6
686,442 - -0.6
686,454 + -2.8
686,464 + -2.7
686,476 - -3.5
688,461 + -1.4
689,443 - -4.0
689,501 + +0.7
689,600 - MMP_RS03655 0.37 +0.9
689,613 + MMP_RS03655 0.41 +0.7
689,660 + MMP_RS03655 0.56 +0.5
689,660 + MMP_RS03655 0.56 -0.4
689,664 + MMP_RS03655 0.57 +0.7
689,706 - MMP_RS03655 0.70 -0.6
689,707 + MMP_RS03655 0.71 +0.2
689,707 + MMP_RS03655 0.71 +0.6
689,707 + MMP_RS03655 0.71 +0.0
689,827 + -0.6
689,871 + +0.3
689,878 - +0.2
689,879 + +0.3
689,879 + +0.3
690,172 - MMP_RS03660 0.23 +1.5
690,209 + MMP_RS03660 0.25 -0.2
690,215 + MMP_RS03660 0.26 +0.9
690,217 + MMP_RS03660 0.26 -0.5
690,217 + MMP_RS03660 0.26 +0.7
690,304 + MMP_RS03660 0.32 -0.3
690,306 + MMP_RS03660 0.33 -0.1
690,376 + MMP_RS03660 0.38 +0.0
690,413 - MMP_RS03660 0.40 +0.3
690,413 - MMP_RS03660 0.40 +0.2
690,414 + MMP_RS03660 0.41 -0.4
690,416 + MMP_RS03660 0.41 +0.6

Or see this region's nucleotide sequence