Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03645

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03635 and MMP_RS03640 are separated by 134 nucleotidesMMP_RS03640 and MMP_RS03645 are separated by 95 nucleotidesMMP_RS03645 and MMP_RS03650 are separated by 262 nucleotides MMP_RS03635: MMP_RS03635 - beta-CASP ribonuclease aCPSF1, at 682,145 to 684,052 _RS03635 MMP_RS03640: MMP_RS03640 - archaeal proteasome endopeptidase complex subunit beta, at 684,187 to 684,846 _RS03640 MMP_RS03645: MMP_RS03645 - proline--tRNA ligase, at 684,942 to 686,324 _RS03645 MMP_RS03650: MMP_RS03650 - leucine--tRNA ligase, at 686,587 to 689,454 _RS03650 Position (kb) 684 685 686 687Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 684.066 kb on + strandat 684.072 kb on + strandat 684.147 kb on - strandat 684.148 kb on + strandat 684.172 kb on - strandat 684.272 kb on + strand, within MMP_RS03640at 684.293 kb on - strand, within MMP_RS03640at 684.293 kb on - strand, within MMP_RS03640at 684.552 kb on - strand, within MMP_RS03640at 684.631 kb on - strand, within MMP_RS03640at 684.631 kb on - strand, within MMP_RS03640at 684.682 kb on - strand, within MMP_RS03640at 684.686 kb on - strand, within MMP_RS03640at 684.860 kb on + strandat 684.860 kb on + strandat 684.862 kb on - strandat 684.875 kb on + strandat 684.893 kb on + strandat 684.943 kb on - strandat 684.944 kb on + strandat 684.944 kb on + strandat 684.966 kb on + strandat 684.983 kb on + strandat 685.193 kb on + strandat 685.699 kb on - strandat 685.701 kb on - strandat 685.772 kb on + strandat 685.944 kb on - strandat 686.003 kb on + strandat 686.006 kb on + strandat 686.209 kb on - strandat 686.341 kb on + strandat 686.393 kb on + strandat 686.397 kb on - strandat 686.397 kb on - strandat 686.406 kb on - strandat 686.406 kb on - strandat 686.406 kb on - strandat 686.410 kb on - strandat 686.421 kb on - strandat 686.422 kb on + strandat 686.422 kb on + strandat 686.422 kb on + strandat 686.429 kb on - strandat 686.430 kb on + strandat 686.430 kb on + strandat 686.442 kb on - strandat 686.454 kb on + strandat 686.464 kb on + strandat 686.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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684,066 + -3.8
684,072 + -4.0
684,147 - -1.4
684,148 + -2.3
684,172 - -0.9
684,272 + MMP_RS03640 0.13 -4.9
684,293 - MMP_RS03640 0.16 -1.6
684,293 - MMP_RS03640 0.16 -0.6
684,552 - MMP_RS03640 0.55 -3.1
684,631 - MMP_RS03640 0.67 -2.8
684,631 - MMP_RS03640 0.67 -5.5
684,682 - MMP_RS03640 0.75 -4.0
684,686 - MMP_RS03640 0.76 -3.8
684,860 + -0.8
684,860 + -0.4
684,862 - -1.0
684,875 + -1.5
684,893 + +0.0
684,943 - +0.4
684,944 + +1.0
684,944 + -0.7
684,966 + -2.4
684,983 + -2.2
685,193 + +0.0
685,699 - -3.0
685,701 - -1.2
685,772 + -4.0
685,944 - -2.2
686,003 + -2.2
686,006 + -1.2
686,209 - -1.9
686,341 + -3.9
686,393 + -3.2
686,397 - -2.7
686,397 - -2.4
686,406 - -1.7
686,406 - -3.0
686,406 - -2.0
686,410 - -2.1
686,421 - +0.8
686,422 + -0.5
686,422 + -3.7
686,422 + -2.5
686,429 - -3.8
686,430 + -4.2
686,430 + -2.6
686,442 - -0.6
686,454 + -2.8
686,464 + -2.7
686,476 - -3.5

Or see this region's nucleotide sequence