Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03635

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03630 and MMP_RS03635 are separated by 83 nucleotidesMMP_RS03635 and MMP_RS03640 are separated by 134 nucleotidesMMP_RS03640 and MMP_RS03645 are separated by 95 nucleotides MMP_RS03630: MMP_RS03630 - hypothetical protein, at 681,195 to 682,061 _RS03630 MMP_RS03635: MMP_RS03635 - beta-CASP ribonuclease aCPSF1, at 682,145 to 684,052 _RS03635 MMP_RS03640: MMP_RS03640 - archaeal proteasome endopeptidase complex subunit beta, at 684,187 to 684,846 _RS03640 MMP_RS03645: MMP_RS03645 - proline--tRNA ligase, at 684,942 to 686,324 _RS03645 Position (kb) 682 683 684 685Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 681.164 kb on - strandat 681.165 kb on + strandat 681.170 kb on - strandat 681.180 kb on - strandat 681.182 kb on - strandat 681.183 kb on + strandat 681.183 kb on + strandat 681.232 kb on - strandat 681.233 kb on + strandat 681.306 kb on - strand, within MMP_RS03630at 681.386 kb on - strand, within MMP_RS03630at 681.430 kb on + strand, within MMP_RS03630at 681.488 kb on - strand, within MMP_RS03630at 681.492 kb on - strand, within MMP_RS03630at 681.492 kb on - strand, within MMP_RS03630at 681.493 kb on + strand, within MMP_RS03630at 681.497 kb on + strand, within MMP_RS03630at 681.497 kb on + strand, within MMP_RS03630at 681.695 kb on - strand, within MMP_RS03630at 681.696 kb on + strand, within MMP_RS03630at 681.726 kb on - strand, within MMP_RS03630at 681.732 kb on - strand, within MMP_RS03630at 681.756 kb on + strand, within MMP_RS03630at 681.756 kb on + strand, within MMP_RS03630at 681.766 kb on - strand, within MMP_RS03630at 681.768 kb on - strand, within MMP_RS03630at 681.768 kb on - strand, within MMP_RS03630at 681.769 kb on + strand, within MMP_RS03630at 681.769 kb on + strand, within MMP_RS03630at 681.799 kb on + strand, within MMP_RS03630at 681.811 kb on - strand, within MMP_RS03630at 681.840 kb on - strand, within MMP_RS03630at 681.841 kb on + strand, within MMP_RS03630at 681.845 kb on - strand, within MMP_RS03630at 681.873 kb on - strand, within MMP_RS03630at 681.918 kb on - strand, within MMP_RS03630at 681.918 kb on - strand, within MMP_RS03630at 681.921 kb on + strand, within MMP_RS03630at 681.928 kb on - strand, within MMP_RS03630at 681.987 kb on - strandat 682.023 kb on - strandat 682.077 kb on - strandat 682.077 kb on - strandat 682.078 kb on + strandat 682.078 kb on + strandat 682.081 kb on - strandat 682.081 kb on - strandat 682.081 kb on - strandat 682.081 kb on - strandat 682.082 kb on + strandat 682.082 kb on + strandat 682.082 kb on + strandat 682.082 kb on + strandat 682.083 kb on - strandat 682.083 kb on - strandat 682.107 kb on - strandat 682.107 kb on - strandat 682.108 kb on + strandat 682.108 kb on + strandat 682.109 kb on - strandat 682.109 kb on - strandat 682.113 kb on - strandat 682.114 kb on + strandat 682.142 kb on - strandat 682.147 kb on + strandat 684.066 kb on + strandat 684.072 kb on + strandat 684.147 kb on - strandat 684.148 kb on + strandat 684.172 kb on - strandat 684.272 kb on + strand, within MMP_RS03640at 684.293 kb on - strand, within MMP_RS03640at 684.293 kb on - strand, within MMP_RS03640at 684.552 kb on - strand, within MMP_RS03640at 684.631 kb on - strand, within MMP_RS03640at 684.631 kb on - strand, within MMP_RS03640at 684.682 kb on - strand, within MMP_RS03640at 684.686 kb on - strand, within MMP_RS03640at 684.860 kb on + strandat 684.860 kb on + strandat 684.862 kb on - strandat 684.875 kb on + strandat 684.893 kb on + strandat 684.943 kb on - strandat 684.944 kb on + strandat 684.944 kb on + strandat 684.966 kb on + strandat 684.983 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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681,164 - +0.7
681,165 + +0.3
681,170 - -1.1
681,180 - +0.2
681,182 - +0.4
681,183 + +0.2
681,183 + -0.3
681,232 - +0.2
681,233 + +0.3
681,306 - MMP_RS03630 0.13 +0.2
681,386 - MMP_RS03630 0.22 -0.2
681,430 + MMP_RS03630 0.27 +0.5
681,488 - MMP_RS03630 0.34 +0.4
681,492 - MMP_RS03630 0.34 -1.3
681,492 - MMP_RS03630 0.34 +0.4
681,493 + MMP_RS03630 0.34 -1.4
681,497 + MMP_RS03630 0.35 -0.1
681,497 + MMP_RS03630 0.35 +0.4
681,695 - MMP_RS03630 0.58 -1.0
681,696 + MMP_RS03630 0.58 +0.3
681,726 - MMP_RS03630 0.61 -0.6
681,732 - MMP_RS03630 0.62 +0.5
681,756 + MMP_RS03630 0.65 +0.5
681,756 + MMP_RS03630 0.65 +0.5
681,766 - MMP_RS03630 0.66 +0.9
681,768 - MMP_RS03630 0.66 -0.5
681,768 - MMP_RS03630 0.66 -0.7
681,769 + MMP_RS03630 0.66 -0.1
681,769 + MMP_RS03630 0.66 +1.1
681,799 + MMP_RS03630 0.70 -0.3
681,811 - MMP_RS03630 0.71 -0.0
681,840 - MMP_RS03630 0.74 -0.2
681,841 + MMP_RS03630 0.75 -0.0
681,845 - MMP_RS03630 0.75 +0.3
681,873 - MMP_RS03630 0.78 -0.4
681,918 - MMP_RS03630 0.83 -0.3
681,918 - MMP_RS03630 0.83 +0.3
681,921 + MMP_RS03630 0.84 -0.2
681,928 - MMP_RS03630 0.85 -0.9
681,987 - +0.8
682,023 - -0.2
682,077 - -0.0
682,077 - -0.5
682,078 + -0.3
682,078 + -1.8
682,081 - -1.6
682,081 - -0.1
682,081 - +0.1
682,081 - -0.4
682,082 + -0.2
682,082 + -0.2
682,082 + -0.0
682,082 + +0.6
682,083 - +0.9
682,083 - +1.1
682,107 - +1.2
682,107 - +0.7
682,108 + +0.3
682,108 + -0.2
682,109 - -0.3
682,109 - +0.4
682,113 - +0.3
682,114 + -0.2
682,142 - +0.1
682,147 + +0.3
684,066 + -3.8
684,072 + -4.0
684,147 - -1.4
684,148 + -2.3
684,172 - -0.9
684,272 + MMP_RS03640 0.13 -4.9
684,293 - MMP_RS03640 0.16 -1.6
684,293 - MMP_RS03640 0.16 -0.6
684,552 - MMP_RS03640 0.55 -3.1
684,631 - MMP_RS03640 0.67 -2.8
684,631 - MMP_RS03640 0.67 -5.5
684,682 - MMP_RS03640 0.75 -4.0
684,686 - MMP_RS03640 0.76 -3.8
684,860 + -0.8
684,860 + -0.4
684,862 - -1.0
684,875 + -1.5
684,893 + +0.0
684,943 - +0.4
684,944 + +1.0
684,944 + -0.7
684,966 + -2.4
684,983 + -2.2

Or see this region's nucleotide sequence