Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03505

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03500 and MMP_RS03505 are separated by 29 nucleotidesMMP_RS03505 and MMP_RS03510 are separated by 12 nucleotidesMMP_RS03510 and MMP_RS03515 are separated by 85 nucleotides MMP_RS03500: MMP_RS03500 - 30S ribosomal protein S2, at 657,133 to 657,795 _RS03500 MMP_RS03505: MMP_RS03505 - hypothetical protein, at 657,825 to 658,433 _RS03505 MMP_RS03510: MMP_RS03510 - 30S ribosomal protein S3ae, at 658,446 to 659,123 _RS03510 MMP_RS03515: MMP_RS03515 - DMT family transporter, at 659,209 to 660,099 _RS03515 Position (kb) 657 658 659Strain fitness (log2 ratio) -1 0 1at 656.835 kb on - strandat 656.838 kb on - strandat 656.914 kb on - strandat 656.926 kb on - strandat 656.977 kb on - strandat 659.033 kb on - strandat 659.093 kb on + strandat 659.277 kb on + strandat 659.301 kb on - strand, within MMP_RS03515at 659.302 kb on + strand, within MMP_RS03515at 659.366 kb on - strand, within MMP_RS03515at 659.404 kb on - strand, within MMP_RS03515at 659.405 kb on + strand, within MMP_RS03515at 659.405 kb on + strand, within MMP_RS03515at 659.433 kb on - strand, within MMP_RS03515

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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656,835 - +0.6
656,838 - -0.5
656,914 - -0.6
656,926 - +0.5
656,977 - -0.7
659,033 - +0.2
659,093 + -1.0
659,277 + -0.6
659,301 - MMP_RS03515 0.10 +0.1
659,302 + MMP_RS03515 0.10 -0.3
659,366 - MMP_RS03515 0.18 +0.4
659,404 - MMP_RS03515 0.22 +0.1
659,405 + MMP_RS03515 0.22 +0.0
659,405 + MMP_RS03515 0.22 +0.5
659,433 - MMP_RS03515 0.25 +0.9

Or see this region's nucleotide sequence