Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS09045 and MMP_RS03170 are separated by 120 nucleotides MMP_RS03170 and MMP_RS03175 are separated by 144 nucleotides MMP_RS03175 and MMP_RS03180 are separated by 8 nucleotides
MMP_RS09045: MMP_RS09045 - class III signal peptide-containing protein, at 597,015 to 597,902
_RS09045
MMP_RS03170: MMP_RS03170 - orotidine-5'-phosphate decarboxylase, at 598,023 to 598,676
_RS03170
MMP_RS03175: MMP_RS03175 - translation initiation factor eIF-1A, at 598,821 to 599,135
_RS03175
MMP_RS03180: MMP_RS03180 - serine protein kinase RIO, at 599,144 to 599,965
_RS03180
Position (kb) 598
599 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 597.038 kb on - strand at 597.042 kb on + strand at 597.043 kb on - strand at 597.043 kb on - strand at 597.080 kb on - strand at 597.080 kb on - strand at 597.108 kb on - strand, within MMP_RS09045 at 597.115 kb on - strand, within MMP_RS09045 at 597.147 kb on + strand, within MMP_RS09045 at 597.197 kb on + strand, within MMP_RS09045 at 597.197 kb on + strand, within MMP_RS09045 at 597.209 kb on + strand, within MMP_RS09045 at 597.209 kb on + strand, within MMP_RS09045 at 597.227 kb on - strand, within MMP_RS09045 at 597.227 kb on - strand, within MMP_RS09045 at 597.228 kb on + strand, within MMP_RS09045 at 597.250 kb on - strand, within MMP_RS09045 at 597.266 kb on - strand, within MMP_RS09045 at 597.328 kb on - strand, within MMP_RS09045 at 597.344 kb on - strand, within MMP_RS09045 at 597.345 kb on + strand, within MMP_RS09045 at 597.505 kb on + strand, within MMP_RS09045 at 597.514 kb on + strand, within MMP_RS09045 at 597.569 kb on - strand, within MMP_RS09045 at 597.593 kb on - strand, within MMP_RS09045 at 597.593 kb on - strand, within MMP_RS09045 at 597.593 kb on - strand, within MMP_RS09045 at 597.593 kb on - strand, within MMP_RS09045 at 597.609 kb on + strand, within MMP_RS09045 at 597.611 kb on - strand, within MMP_RS09045 at 597.612 kb on + strand, within MMP_RS09045 at 597.612 kb on + strand, within MMP_RS09045 at 597.626 kb on - strand, within MMP_RS09045 at 597.626 kb on - strand, within MMP_RS09045 at 597.627 kb on + strand, within MMP_RS09045 at 597.629 kb on - strand, within MMP_RS09045 at 597.629 kb on - strand, within MMP_RS09045 at 597.644 kb on - strand, within MMP_RS09045 at 597.645 kb on + strand, within MMP_RS09045 at 597.662 kb on - strand, within MMP_RS09045 at 597.666 kb on + strand, within MMP_RS09045 at 597.680 kb on - strand, within MMP_RS09045 at 597.681 kb on + strand, within MMP_RS09045 at 597.797 kb on - strand, within MMP_RS09045 at 597.840 kb on - strand at 597.855 kb on - strand at 597.855 kb on - strand at 597.902 kb on - strand at 597.902 kb on - strand at 597.903 kb on + strand at 597.903 kb on + strand at 597.906 kb on - strand at 597.920 kb on + strand at 597.958 kb on - strand at 597.965 kb on + strand at 597.965 kb on + strand at 597.965 kb on + strand at 597.965 kb on + strand at 597.966 kb on - strand at 597.966 kb on - strand at 597.967 kb on + strand at 597.969 kb on + strand at 597.982 kb on + strand at 598.013 kb on - strand at 598.014 kb on + strand at 598.024 kb on - strand at 598.025 kb on + strand at 598.411 kb on + strand at 598.533 kb on + strand at 598.677 kb on + strand at 598.689 kb on + strand at 598.863 kb on + strand at 599.116 kb on + strand at 599.499 kb on - strand at 599.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 597,038 - +0.4 597,042 + -1.1 597,043 - +0.7 597,043 - +0.2 597,080 - -0.9 597,080 - -2.2 597,108 - MMP_RS09045 0.10 -1.3 597,115 - MMP_RS09045 0.11 -0.6 597,147 + MMP_RS09045 0.15 -1.8 597,197 + MMP_RS09045 0.20 -0.2 597,197 + MMP_RS09045 0.20 -0.8 597,209 + MMP_RS09045 0.22 -0.8 597,209 + MMP_RS09045 0.22 -0.5 597,227 - MMP_RS09045 0.24 -1.0 597,227 - MMP_RS09045 0.24 -0.6 597,228 + MMP_RS09045 0.24 -0.2 597,250 - MMP_RS09045 0.26 -0.5 597,266 - MMP_RS09045 0.28 -1.4 597,328 - MMP_RS09045 0.35 -1.0 597,344 - MMP_RS09045 0.37 -0.8 597,345 + MMP_RS09045 0.37 -0.4 597,505 + MMP_RS09045 0.55 +0.4 597,514 + MMP_RS09045 0.56 -1.7 597,569 - MMP_RS09045 0.62 +0.4 597,593 - MMP_RS09045 0.65 +0.2 597,593 - MMP_RS09045 0.65 +0.5 597,593 - MMP_RS09045 0.65 -0.0 597,593 - MMP_RS09045 0.65 +0.4 597,609 + MMP_RS09045 0.67 +1.1 597,611 - MMP_RS09045 0.67 +0.7 597,612 + MMP_RS09045 0.67 -0.2 597,612 + MMP_RS09045 0.67 +0.2 597,626 - MMP_RS09045 0.69 +0.3 597,626 - MMP_RS09045 0.69 +0.5 597,627 + MMP_RS09045 0.69 +0.8 597,629 - MMP_RS09045 0.69 -0.1 597,629 - MMP_RS09045 0.69 +0.5 597,644 - MMP_RS09045 0.71 -0.2 597,645 + MMP_RS09045 0.71 -0.3 597,662 - MMP_RS09045 0.73 -0.7 597,666 + MMP_RS09045 0.73 +0.4 597,680 - MMP_RS09045 0.75 -0.7 597,681 + MMP_RS09045 0.75 +0.6 597,797 - MMP_RS09045 0.88 -0.2 597,840 - +0.3 597,855 - +0.1 597,855 - +0.0 597,902 - -0.2 597,902 - +0.5 597,903 + +1.0 597,903 + -0.8 597,906 - -0.2 597,920 + -0.9 597,958 - -0.2 597,965 + +0.4 597,965 + +1.2 597,965 + -0.6 597,965 + -0.6 597,966 - +1.1 597,966 - +0.3 597,967 + +0.4 597,969 + -0.5 597,982 + +0.8 598,013 - +0.3 598,014 + -1.5 598,024 - -0.7 598,025 + -0.7 598,411 + -1.5 598,533 + -1.8 598,677 + -2.4 598,689 + -1.4 598,863 + -3.2 599,116 + -2.6 599,499 - -0.8 599,527 - -1.4
Or see this region's nucleotide sequence