Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02145 and MMP_RS02150 are separated by 301 nucleotides MMP_RS02150 and MMP_RS02155 are separated by 17 nucleotides
MMP_RS02145: MMP_RS02145 - winged helix-turn-helix transcriptional regulator, at 400,766 to 402,076
_RS02145
MMP_RS02150: MMP_RS02150 - hypothetical protein, at 402,378 to 403,463
_RS02150
MMP_RS02155: MMP_RS02155 - 2-phospho-L-lactate transferase, at 403,481 to 404,410
_RS02155
Position (kb) 402
403
404 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 401.434 kb on - strand, within MMP_RS02145 at 401.527 kb on - strand, within MMP_RS02145 at 401.568 kb on - strand, within MMP_RS02145 at 401.584 kb on + strand, within MMP_RS02145 at 401.629 kb on + strand, within MMP_RS02145 at 401.672 kb on + strand, within MMP_RS02145 at 401.675 kb on + strand, within MMP_RS02145 at 401.680 kb on + strand, within MMP_RS02145 at 401.692 kb on + strand, within MMP_RS02145 at 401.869 kb on + strand, within MMP_RS02145 at 402.060 kb on - strand at 402.060 kb on - strand at 402.092 kb on + strand at 402.112 kb on + strand at 402.127 kb on - strand at 402.132 kb on - strand at 402.132 kb on - strand at 402.132 kb on - strand at 402.132 kb on - strand at 402.132 kb on - strand at 402.133 kb on + strand at 402.133 kb on + strand at 402.133 kb on + strand at 402.133 kb on + strand at 402.133 kb on + strand at 402.133 kb on + strand at 402.135 kb on + strand at 402.148 kb on - strand at 402.148 kb on - strand at 402.194 kb on + strand at 402.198 kb on - strand at 402.230 kb on + strand at 402.246 kb on + strand at 402.250 kb on - strand at 402.250 kb on - strand at 402.251 kb on + strand at 402.251 kb on + strand at 402.389 kb on - strand at 402.395 kb on - strand at 402.861 kb on - strand at 402.862 kb on + strand at 402.864 kb on + strand at 402.876 kb on - strand at 402.908 kb on - strand at 402.935 kb on + strand at 402.935 kb on + strand at 402.971 kb on + strand at 402.971 kb on + strand at 403.071 kb on - strand at 403.129 kb on - strand at 403.232 kb on + strand at 403.235 kb on - strand at 403.314 kb on - strand at 403.320 kb on + strand at 403.320 kb on + strand at 403.320 kb on + strand at 403.320 kb on + strand at 403.328 kb on - strand at 403.377 kb on - strand at 403.413 kb on + strand at 403.443 kb on + strand at 403.448 kb on + strand at 403.489 kb on + strand at 403.489 kb on + strand at 403.492 kb on - strand at 403.592 kb on + strand at 403.595 kb on - strand at 403.595 kb on - strand at 403.595 kb on - strand at 403.595 kb on - strand at 403.596 kb on + strand at 403.597 kb on - strand at 403.611 kb on + strand at 403.611 kb on + strand at 403.811 kb on + strand at 403.811 kb on + strand at 403.811 kb on + strand at 403.984 kb on - strand at 403.986 kb on - strand at 403.987 kb on + strand at 404.163 kb on - strand at 404.164 kb on + strand at 404.164 kb on + strand at 404.244 kb on + strand at 404.250 kb on + strand at 404.260 kb on - strand at 404.265 kb on - strand at 404.266 kb on + strand at 404.287 kb on - strand at 404.293 kb on - strand at 404.293 kb on - strand at 404.294 kb on + strand at 404.294 kb on + strand at 404.329 kb on + strand at 404.452 kb on - strand at 404.455 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 401,434 - MMP_RS02145 0.51 -3.9 401,527 - MMP_RS02145 0.58 -4.3 401,568 - MMP_RS02145 0.61 -5.4 401,584 + MMP_RS02145 0.62 -5.6 401,629 + MMP_RS02145 0.66 -3.0 401,672 + MMP_RS02145 0.69 -4.6 401,675 + MMP_RS02145 0.69 -2.8 401,680 + MMP_RS02145 0.70 -2.4 401,692 + MMP_RS02145 0.71 -2.3 401,869 + MMP_RS02145 0.84 -4.3 402,060 - -2.2 402,060 - +0.5 402,092 + +0.3 402,112 + +0.0 402,127 - -0.4 402,132 - -0.5 402,132 - -0.5 402,132 - +0.2 402,132 - +1.2 402,132 - -0.0 402,133 + -0.3 402,133 + -0.2 402,133 + +0.3 402,133 + +0.7 402,133 + +0.4 402,133 + +0.4 402,135 + +1.1 402,148 - -0.1 402,148 - -0.3 402,194 + -0.4 402,198 - -1.8 402,230 + -1.7 402,246 + -2.1 402,250 - -3.4 402,250 - -1.8 402,251 + +1.0 402,251 + -3.2 402,389 - -2.4 402,395 - -3.0 402,861 - -3.4 402,862 + -1.9 402,864 + -0.9 402,876 - -1.3 402,908 - -1.2 402,935 + -0.2 402,935 + -3.1 402,971 + -0.8 402,971 + -0.1 403,071 - -1.2 403,129 - -1.7 403,232 + -0.7 403,235 - -2.0 403,314 - -1.7 403,320 + -1.8 403,320 + -1.5 403,320 + -2.9 403,320 + -2.5 403,328 - -0.4 403,377 - -4.6 403,413 + -1.4 403,443 + +0.7 403,448 + -0.2 403,489 + -4.9 403,489 + -2.0 403,492 - -0.5 403,592 + -2.9 403,595 - -1.6 403,595 - -2.9 403,595 - -3.9 403,595 - -4.3 403,596 + -2.6 403,597 - -3.0 403,611 + -3.4 403,611 + -0.6 403,811 + -2.1 403,811 + -1.5 403,811 + -3.5 403,984 - -1.7 403,986 - -1.7 403,987 + -5.3 404,163 - -4.9 404,164 + -2.9 404,164 + -1.8 404,244 + -2.6 404,250 + -1.1 404,260 - -5.7 404,265 - -1.5 404,266 + -2.6 404,287 - -2.1 404,293 - -2.2 404,293 - -2.4 404,294 + -2.8 404,294 + -3.2 404,329 + -3.1 404,452 - -1.9 404,455 + -3.5
Or see this region's nucleotide sequence