Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02130 and MMP_RS02135 are separated by 9 nucleotides MMP_RS02135 and MMP_RS02140 are separated by 35 nucleotides MMP_RS02140 and MMP_RS02145 are separated by 69 nucleotides
MMP_RS02130: MMP_RS02130 - zinc metalloprotease HtpX, at 398,202 to 399,059
_RS02130
MMP_RS02135: MMP_RS02135 - DUF5612 domain-containing protein, at 399,069 to 399,722
_RS02135
MMP_RS02140: MMP_RS02140 - methionine synthase, at 399,758 to 400,696
_RS02140
MMP_RS02145: MMP_RS02145 - winged helix-turn-helix transcriptional regulator, at 400,766 to 402,076
_RS02145
Position (kb) 399
400
401 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 398.856 kb on - strand, within MMP_RS02130 at 399.089 kb on + strand at 399.119 kb on - strand at 399.158 kb on + strand, within MMP_RS02135 at 399.162 kb on - strand, within MMP_RS02135 at 399.162 kb on - strand, within MMP_RS02135 at 399.163 kb on + strand, within MMP_RS02135 at 399.192 kb on + strand, within MMP_RS02135 at 399.207 kb on + strand, within MMP_RS02135 at 399.423 kb on + strand, within MMP_RS02135 at 399.587 kb on + strand, within MMP_RS02135 at 399.694 kb on - strand at 399.695 kb on + strand at 399.789 kb on - strand at 399.850 kb on - strand at 399.948 kb on - strand at 400.297 kb on - strand at 400.390 kb on - strand at 400.707 kb on + strand at 400.735 kb on - strand at 400.739 kb on - strand at 400.753 kb on + strand at 400.778 kb on + strand at 400.898 kb on - strand, within MMP_RS02145 at 400.906 kb on - strand, within MMP_RS02145 at 400.907 kb on + strand, within MMP_RS02145 at 400.912 kb on - strand, within MMP_RS02145 at 400.913 kb on + strand, within MMP_RS02145 at 401.009 kb on + strand, within MMP_RS02145 at 401.106 kb on - strand, within MMP_RS02145 at 401.107 kb on + strand, within MMP_RS02145 at 401.108 kb on - strand, within MMP_RS02145 at 401.109 kb on + strand, within MMP_RS02145 at 401.109 kb on + strand, within MMP_RS02145 at 401.109 kb on + strand, within MMP_RS02145 at 401.111 kb on + strand, within MMP_RS02145 at 401.113 kb on - strand, within MMP_RS02145 at 401.115 kb on - strand, within MMP_RS02145 at 401.116 kb on + strand, within MMP_RS02145 at 401.176 kb on + strand, within MMP_RS02145 at 401.213 kb on + strand, within MMP_RS02145 at 401.221 kb on - strand, within MMP_RS02145 at 401.221 kb on - strand, within MMP_RS02145 at 401.254 kb on + strand, within MMP_RS02145 at 401.300 kb on + strand, within MMP_RS02145 at 401.310 kb on + strand, within MMP_RS02145 at 401.326 kb on + strand, within MMP_RS02145 at 401.434 kb on - strand, within MMP_RS02145 at 401.527 kb on - strand, within MMP_RS02145 at 401.568 kb on - strand, within MMP_RS02145 at 401.584 kb on + strand, within MMP_RS02145 at 401.629 kb on + strand, within MMP_RS02145 at 401.672 kb on + strand, within MMP_RS02145 at 401.675 kb on + strand, within MMP_RS02145 at 401.680 kb on + strand, within MMP_RS02145 at 401.692 kb on + strand, within MMP_RS02145
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 398,856 - MMP_RS02130 0.76 -2.1 399,089 + -0.2 399,119 - -2.3 399,158 + MMP_RS02135 0.14 -0.1 399,162 - MMP_RS02135 0.14 -2.3 399,162 - MMP_RS02135 0.14 -1.9 399,163 + MMP_RS02135 0.14 -1.5 399,192 + MMP_RS02135 0.19 -0.3 399,207 + MMP_RS02135 0.21 -1.3 399,423 + MMP_RS02135 0.54 -1.3 399,587 + MMP_RS02135 0.79 -1.1 399,694 - -2.0 399,695 + -0.4 399,789 - -3.6 399,850 - -2.7 399,948 - -4.8 400,297 - -4.0 400,390 - -5.3 400,707 + -0.6 400,735 - -2.6 400,739 - -3.3 400,753 + -2.2 400,778 + -3.4 400,898 - MMP_RS02145 0.10 -4.5 400,906 - MMP_RS02145 0.11 -4.4 400,907 + MMP_RS02145 0.11 -3.3 400,912 - MMP_RS02145 0.11 -4.6 400,913 + MMP_RS02145 0.11 -4.6 401,009 + MMP_RS02145 0.19 -2.8 401,106 - MMP_RS02145 0.26 -4.6 401,107 + MMP_RS02145 0.26 -2.8 401,108 - MMP_RS02145 0.26 -2.4 401,109 + MMP_RS02145 0.26 -1.3 401,109 + MMP_RS02145 0.26 -3.4 401,109 + MMP_RS02145 0.26 -3.3 401,111 + MMP_RS02145 0.26 -3.8 401,113 - MMP_RS02145 0.26 -3.3 401,115 - MMP_RS02145 0.27 -3.5 401,116 + MMP_RS02145 0.27 -4.2 401,176 + MMP_RS02145 0.31 -3.0 401,213 + MMP_RS02145 0.34 -2.4 401,221 - MMP_RS02145 0.35 -3.3 401,221 - MMP_RS02145 0.35 -3.7 401,254 + MMP_RS02145 0.37 -5.1 401,300 + MMP_RS02145 0.41 -2.0 401,310 + MMP_RS02145 0.41 -2.8 401,326 + MMP_RS02145 0.43 -4.6 401,434 - MMP_RS02145 0.51 -3.9 401,527 - MMP_RS02145 0.58 -4.3 401,568 - MMP_RS02145 0.61 -5.4 401,584 + MMP_RS02145 0.62 -5.6 401,629 + MMP_RS02145 0.66 -3.0 401,672 + MMP_RS02145 0.69 -4.6 401,675 + MMP_RS02145 0.69 -2.8 401,680 + MMP_RS02145 0.70 -2.4 401,692 + MMP_RS02145 0.71 -2.3
Or see this region's nucleotide sequence