Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02065

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02060 and MMP_RS02065 are separated by 236 nucleotidesMMP_RS02065 and MMP_RS02070 are separated by 289 nucleotidesMMP_RS02070 and MMP_RS02075 are separated by 31 nucleotides MMP_RS02060: MMP_RS02060 - UMP kinase, at 384,368 to 385,045 _RS02060 MMP_RS02065: MMP_RS02065 - histone family protein, at 385,282 to 385,485 _RS02065 MMP_RS02070: MMP_RS02070 - hypothetical protein, at 385,775 to 386,296 _RS02070 MMP_RS02075: MMP_RS02075 - NAD(P)/FAD-dependent oxidoreductase, at 386,328 to 387,500 _RS02075 Position (kb) 385 386Strain fitness (log2 ratio) -2 -1 0 1 2at 384.306 kb on - strandat 384.307 kb on + strandat 384.310 kb on - strandat 384.354 kb on + strandat 384.740 kb on + strandat 385.122 kb on - strandat 385.180 kb on - strandat 385.180 kb on - strandat 385.193 kb on - strandat 385.193 kb on - strandat 385.231 kb on - strandat 385.292 kb on + strandat 385.571 kb on + strandat 385.609 kb on - strandat 385.614 kb on - strandat 385.619 kb on - strandat 385.624 kb on - strandat 385.628 kb on - strandat 385.629 kb on + strandat 385.633 kb on - strandat 385.634 kb on + strandat 385.668 kb on + strandat 386.072 kb on - strandat 386.122 kb on + strandat 386.176 kb on + strandat 386.244 kb on - strandat 386.247 kb on - strandat 386.255 kb on - strandat 386.259 kb on + strandat 386.259 kb on + strandat 386.301 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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384,306 - -0.4
384,307 + -1.2
384,310 - -0.2
384,354 + -0.2
384,740 + +0.8
385,122 - -1.0
385,180 - -0.3
385,180 - +0.1
385,193 - -0.1
385,193 - -0.1
385,231 - +0.7
385,292 + -1.9
385,571 + -0.2
385,609 - -0.7
385,614 - -0.5
385,619 - +0.0
385,624 - -0.2
385,628 - +0.2
385,629 + +0.2
385,633 - +1.9
385,634 + -0.1
385,668 + +0.5
386,072 - -2.5
386,122 + -0.2
386,176 + -0.2
386,244 - -0.1
386,247 - +1.4
386,255 - +0.9
386,259 + +1.1
386,259 + -0.4
386,301 - +0.4

Or see this region's nucleotide sequence