Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02060

Experiment: H2 N-free with 10mM L-Aspartic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS02040 and MMP_RS02045 are separated by 213 nucleotidesMMP_RS02045 and MMP_RS02050 are separated by 86 nucleotidesMMP_RS02050 and MMP_RS02055 are separated by 114 nucleotidesMMP_RS02055 and MMP_RS02060 are separated by 105 nucleotidesMMP_RS02060 and MMP_RS02065 are separated by 236 nucleotidesMMP_RS02065 and MMP_RS02070 are separated by 289 nucleotides MMP_RS02040: MMP_RS02040 - S-layer protein, at 381,781 to 383,508 _RS02040 MMP_RS02045: MMP_RS02045 - tRNA-Met, at 383,722 to 383,800 _RS02045 MMP_RS02050: MMP_RS02050 - tRNA-Met, at 383,887 to 383,965 _RS02050 MMP_RS02055: MMP_RS02055 - DUF2116 family Zn-ribbon domain-containing protein, at 384,080 to 384,262 _RS02055 MMP_RS02060: MMP_RS02060 - UMP kinase, at 384,368 to 385,045 _RS02060 MMP_RS02065: MMP_RS02065 - histone family protein, at 385,282 to 385,485 _RS02065 MMP_RS02070: MMP_RS02070 - hypothetical protein, at 385,775 to 386,296 _RS02070 Position (kb) 384 385 386Strain fitness (log2 ratio) -2 -1 0 1 2at 383.511 kb on + strandat 383.622 kb on - strandat 383.623 kb on + strandat 383.690 kb on - strandat 383.695 kb on + strandat 383.707 kb on - strandat 383.792 kb on - strand, within MMP_RS02045at 383.822 kb on - strandat 384.007 kb on - strandat 384.096 kb on - strandat 384.097 kb on + strandat 384.097 kb on + strandat 384.306 kb on - strandat 384.307 kb on + strandat 384.310 kb on - strandat 384.354 kb on + strandat 384.740 kb on + strandat 385.122 kb on - strandat 385.180 kb on - strandat 385.180 kb on - strandat 385.193 kb on - strandat 385.193 kb on - strandat 385.231 kb on - strandat 385.292 kb on + strandat 385.571 kb on + strandat 385.609 kb on - strandat 385.614 kb on - strandat 385.619 kb on - strandat 385.624 kb on - strandat 385.628 kb on - strandat 385.629 kb on + strandat 385.633 kb on - strandat 385.634 kb on + strandat 385.668 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
remove
383,511 + +0.2
383,622 - +0.6
383,623 + +0.2
383,690 - -1.2
383,695 + -1.3
383,707 - -1.0
383,792 - MMP_RS02045 0.89 +0.7
383,822 - +0.8
384,007 - -1.6
384,096 - +0.3
384,097 + +0.8
384,097 + +0.4
384,306 - -0.4
384,307 + -1.2
384,310 - -0.2
384,354 + -0.2
384,740 + +0.8
385,122 - -1.0
385,180 - -0.3
385,180 - +0.1
385,193 - -0.1
385,193 - -0.1
385,231 - +0.7
385,292 + -1.9
385,571 + -0.2
385,609 - -0.7
385,614 - -0.5
385,619 - +0.0
385,624 - -0.2
385,628 - +0.2
385,629 + +0.2
385,633 - +1.9
385,634 + -0.1
385,668 + +0.5

Or see this region's nucleotide sequence