Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02035

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02025 and MMP_RS02030 are separated by 179 nucleotidesMMP_RS02030 and MMP_RS02035 are separated by 78 nucleotidesMMP_RS02035 and MMP_RS02040 are separated by 417 nucleotides MMP_RS02025: MMP_RS02025 - DNA-directed DNA polymerase, at 376,490 to 378,844 _RS02025 MMP_RS02030: MMP_RS02030 - homoaconitase small subunit, at 379,024 to 379,512 _RS02030 MMP_RS02035: MMP_RS02035 - ribosome biogenesis/translation initiation ATPase RLI, at 379,591 to 381,363 _RS02035 MMP_RS02040: MMP_RS02040 - S-layer protein, at 381,781 to 383,508 _RS02040 Position (kb) 379 380 381 382Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 378.770 kb on - strandat 378.771 kb on + strandat 378.771 kb on + strandat 378.782 kb on - strandat 378.791 kb on - strandat 378.791 kb on - strandat 378.791 kb on - strandat 378.792 kb on + strandat 378.792 kb on + strandat 378.792 kb on + strandat 378.795 kb on - strandat 378.796 kb on + strandat 378.796 kb on + strandat 378.925 kb on - strandat 378.964 kb on - strandat 379.190 kb on - strandat 379.380 kb on + strandat 379.550 kb on + strandat 379.557 kb on + strandat 379.615 kb on - strandat 379.864 kb on - strandat 380.444 kb on + strandat 380.472 kb on + strandat 380.922 kb on - strandat 381.071 kb on - strandat 381.159 kb on - strandat 381.402 kb on + strandat 381.413 kb on + strandat 381.433 kb on + strandat 381.441 kb on + strandat 381.448 kb on - strandat 381.759 kb on + strandat 381.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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378,770 - -0.5
378,771 + +0.3
378,771 + +0.7
378,782 - +0.5
378,791 - +0.2
378,791 - -0.1
378,791 - +1.0
378,792 + +0.5
378,792 + +0.6
378,792 + +0.5
378,795 - -0.4
378,796 + +0.4
378,796 + -0.3
378,925 - -0.9
378,964 - -3.9
379,190 - -3.3
379,380 + -0.7
379,550 + -0.1
379,557 + +0.5
379,615 - -3.2
379,864 - -3.0
380,444 + -3.7
380,472 + -1.4
380,922 - -3.6
381,071 - -3.0
381,159 - -2.9
381,402 + -0.5
381,413 + +0.6
381,433 + -1.9
381,441 + -0.7
381,448 - +0.9
381,759 + -3.6
381,803 - -4.5

Or see this region's nucleotide sequence