Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01705

Experiment: H2 N-free with 10mM L-Aspartic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS01700 and MMP_RS01705 are separated by 77 nucleotidesMMP_RS01705 and MMP_RS01710 are separated by 19 nucleotides MMP_RS01700: MMP_RS01700 - dihydroxy-acid dehydratase, at 314,207 to 315,859 _RS01700 MMP_RS01705: MMP_RS01705 - precorrin-2 C(20)-methyltransferase, at 315,937 to 316,623 _RS01705 MMP_RS01710: MMP_RS01710 - shikimate kinase, at 316,643 to 317,494 _RS01710 Position (kb) 315 316 317Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 315.361 kb on + strand, within MMP_RS01700at 315.828 kb on + strandat 315.902 kb on + strandat 315.939 kb on + strandat 315.972 kb on + strandat 316.278 kb on - strandat 316.980 kb on + strandat 317.543 kb on + strandat 317.549 kb on - strandat 317.558 kb on + strandat 317.559 kb on - strandat 317.570 kb on - strandat 317.570 kb on - strandat 317.573 kb on - strandat 317.573 kb on - strandat 317.576 kb on - strandat 317.578 kb on - strandat 317.579 kb on + strandat 317.581 kb on - strandat 317.581 kb on - strandat 317.587 kb on + strandat 317.587 kb on + strandat 317.614 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
remove
315,361 + MMP_RS01700 0.70 -3.8
315,828 + -3.9
315,902 + -3.1
315,939 + -0.0
315,972 + -2.7
316,278 - -2.4
316,980 + +1.1
317,543 + -3.6
317,549 - -0.9
317,558 + -1.6
317,559 - +0.3
317,570 - -1.3
317,570 - -0.9
317,573 - -0.5
317,573 - -1.4
317,576 - -1.3
317,578 - -1.6
317,579 + -0.5
317,581 - -1.1
317,581 - -1.6
317,587 + -1.8
317,587 + -1.9
317,614 + -0.7

Or see this region's nucleotide sequence