Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01595

Experiment: H2 N-free with 10mM L-Aspartic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS01590 and MMP_RS01595 are separated by 57 nucleotidesMMP_RS01595 and MMP_RS01600 are separated by 226 nucleotides MMP_RS01590: MMP_RS01590 - hypothetical protein, at 296,196 to 297,284 _RS01590 MMP_RS01595: MMP_RS01595 - translation initiation factor IF-2 subunit beta, at 297,342 to 297,758 _RS01595 MMP_RS01600: MMP_RS01600 - 50S ribosomal protein L15e, at 297,985 to 298,569 _RS01600 Position (kb) 297 298Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 296.455 kb on - strandat 296.564 kb on - strandat 296.845 kb on - strandat 296.855 kb on - strandat 296.856 kb on + strandat 296.927 kb on - strandat 297.045 kb on + strandat 297.315 kb on - strandat 297.319 kb on - strandat 297.843 kb on + strandat 297.874 kb on - strandat 297.891 kb on + strandat 298.001 kb on + strandat 298.141 kb on - strand, within MMP_RS01600at 298.183 kb on + strand, within MMP_RS01600at 298.380 kb on + strand, within MMP_RS01600at 298.504 kb on - strand, within MMP_RS01600at 298.616 kb on - strandat 298.656 kb on - strandat 298.660 kb on - strandat 298.661 kb on + strandat 298.668 kb on - strandat 298.679 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
remove
296,455 - -0.6
296,564 - -3.0
296,845 - -0.9
296,855 - -0.7
296,856 + -2.8
296,927 - -4.2
297,045 + +0.2
297,315 - -0.4
297,319 - +0.1
297,843 + -2.6
297,874 - -3.6
297,891 + -2.9
298,001 + -2.1
298,141 - MMP_RS01600 0.27 -3.9
298,183 + MMP_RS01600 0.34 -2.6
298,380 + MMP_RS01600 0.68 -1.4
298,504 - MMP_RS01600 0.89 -0.1
298,616 - +0.5
298,656 - +0.2
298,660 - -0.1
298,661 + -0.7
298,668 - +0.5
298,679 - -0.2

Or see this region's nucleotide sequence