Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01560

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01555 and MMP_RS01560 are separated by 247 nucleotidesMMP_RS01560 and MMP_RS01565 are separated by 72 nucleotides MMP_RS01555: MMP_RS01555 - hydrogenase formation protein HypD, at 289,876 to 290,958 _RS01555 MMP_RS01560: MMP_RS01560 - nascent polypeptide-associated complex protein, at 291,206 to 291,586 _RS01560 MMP_RS01565: MMP_RS01565 - AIR synthase related protein, at 291,659 to 293,002 _RS01565 Position (kb) 291 292Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 290.334 kb on + strandat 290.395 kb on - strandat 290.395 kb on - strandat 290.397 kb on - strandat 290.397 kb on - strandat 290.397 kb on - strandat 290.676 kb on + strandat 290.697 kb on - strandat 290.700 kb on - strandat 290.958 kb on - strandat 290.959 kb on + strandat 291.003 kb on - strandat 291.003 kb on - strandat 291.003 kb on - strandat 291.003 kb on - strandat 291.006 kb on + strandat 291.008 kb on + strandat 291.013 kb on - strandat 291.036 kb on - strandat 291.036 kb on - strandat 291.037 kb on + strandat 291.042 kb on - strandat 291.054 kb on - strandat 291.055 kb on + strandat 291.139 kb on - strandat 291.140 kb on + strandat 291.146 kb on + strandat 291.163 kb on - strandat 291.168 kb on + strandat 291.172 kb on - strandat 291.187 kb on - strandat 291.191 kb on - strandat 291.674 kb on - strandat 291.807 kb on - strandat 291.854 kb on - strandat 291.855 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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290,334 + -3.7
290,395 - -1.8
290,395 - -4.8
290,397 - -3.2
290,397 - -3.2
290,397 - -5.1
290,676 + -2.7
290,697 - -2.9
290,700 - -2.7
290,958 - -0.6
290,959 + -3.3
291,003 - -1.1
291,003 - -0.6
291,003 - +0.5
291,003 - +0.6
291,006 + +0.7
291,008 + +0.4
291,013 - +0.8
291,036 - -0.7
291,036 - -1.1
291,037 + +0.2
291,042 - +1.0
291,054 - +0.1
291,055 + +0.3
291,139 - +0.9
291,140 + +0.1
291,146 + +0.1
291,163 - -2.0
291,168 + -0.3
291,172 - -0.2
291,187 - -3.6
291,191 - -1.0
291,674 - -2.0
291,807 - -4.3
291,854 - -3.7
291,855 + -1.3

Or see this region's nucleotide sequence