Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01510

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01505 and MMP_RS01510 are separated by 20 nucleotidesMMP_RS01510 and MMP_RS01515 are separated by 60 nucleotides MMP_RS01505: MMP_RS01505 - hypothetical protein, at 280,059 to 281,036 _RS01505 MMP_RS01510: MMP_RS01510 - phosphoribosyl-AMP cyclohydrolase, at 281,057 to 281,446 _RS01510 MMP_RS01515: MMP_RS01515 - PINc/VapC family ATPase, at 281,507 to 283,399 _RS01515 Position (kb) 281 282Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 280.934 kb on - strandat 280.991 kb on - strandat 280.991 kb on - strandat 280.993 kb on - strandat 280.994 kb on + strandat 281.301 kb on - strandat 281.374 kb on - strandat 281.375 kb on + strandat 281.375 kb on + strandat 281.617 kb on + strandat 281.742 kb on - strand, within MMP_RS01515at 281.742 kb on - strand, within MMP_RS01515at 281.767 kb on + strand, within MMP_RS01515at 281.767 kb on + strand, within MMP_RS01515at 281.770 kb on + strand, within MMP_RS01515at 281.781 kb on + strand, within MMP_RS01515at 281.924 kb on + strand, within MMP_RS01515at 281.974 kb on + strand, within MMP_RS01515at 282.159 kb on - strand, within MMP_RS01515at 282.186 kb on - strand, within MMP_RS01515

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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280,934 - -4.4
280,991 - -0.8
280,991 - -2.2
280,993 - -2.9
280,994 + -2.0
281,301 - -0.1
281,374 - -3.4
281,375 + -2.3
281,375 + -2.7
281,617 + -0.1
281,742 - MMP_RS01515 0.12 +0.0
281,742 - MMP_RS01515 0.12 +0.3
281,767 + MMP_RS01515 0.14 -0.9
281,767 + MMP_RS01515 0.14 -0.6
281,770 + MMP_RS01515 0.14 +1.1
281,781 + MMP_RS01515 0.14 -0.9
281,924 + MMP_RS01515 0.22 -0.8
281,974 + MMP_RS01515 0.25 -1.3
282,159 - MMP_RS01515 0.34 -1.4
282,186 - MMP_RS01515 0.36 +0.6

Or see this region's nucleotide sequence