Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01345

Experiment: H2 N-free with 10mM L-Aspartic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS01330 and MMP_RS01335 are separated by 37 nucleotidesMMP_RS01335 and MMP_RS01340 are separated by 57 nucleotidesMMP_RS01340 and MMP_RS01345 are separated by 7 nucleotidesMMP_RS01345 and MMP_RS01350 overlap by 1 nucleotidesMMP_RS01350 and MMP_RS01355 are separated by 54 nucleotidesMMP_RS01355 and MMP_RS01360 are separated by 29 nucleotides MMP_RS01330: MMP_RS01330 - DHH family phosphoesterase, at 248,751 to 249,767 _RS01330 MMP_RS01335: MMP_RS01335 - prefoldin subunit beta, at 249,805 to 250,146 _RS01335 MMP_RS01340: MMP_RS01340 - KEOPS complex Pcc1-like subunit, at 250,204 to 250,455 _RS01340 MMP_RS01345: MMP_RS01345 - rRNA maturation protein, at 250,463 to 250,957 _RS01345 MMP_RS01350: MMP_RS01350 - DNA-directed RNA polymerase subunit P, at 250,957 to 251,097 _RS01350 MMP_RS01355: MMP_RS01355 - 50S ribosomal protein L37Ae, at 251,152 to 251,442 _RS01355 MMP_RS01360: MMP_RS01360 - ribosome assembly factor SBDS, at 251,472 to 252,176 _RS01360 Position (kb) 250 251Strain fitness (log2 ratio) -3 -2 -1 0 1at 249.534 kb on - strand, within MMP_RS01330at 249.534 kb on - strand, within MMP_RS01330at 249.534 kb on - strand, within MMP_RS01330at 249.555 kb on - strand, within MMP_RS01330at 249.588 kb on - strand, within MMP_RS01330at 249.604 kb on + strand, within MMP_RS01330at 249.714 kb on - strandat 249.790 kb on - strandat 249.806 kb on - strandat 249.854 kb on - strand, within MMP_RS01335at 249.891 kb on - strand, within MMP_RS01335at 250.181 kb on + strandat 250.192 kb on + strandat 250.202 kb on - strandat 250.206 kb on + strandat 250.226 kb on - strandat 250.226 kb on - strandat 250.227 kb on + strandat 250.260 kb on + strandat 250.265 kb on - strandat 250.458 kb on - strandat 250.603 kb on + strandat 250.606 kb on - strandat 250.811 kb on - strandat 250.811 kb on - strandat 250.812 kb on + strandat 250.818 kb on + strandat 250.977 kb on - strandat 250.993 kb on - strandat 251.491 kb on + strandat 251.495 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
remove
249,534 - MMP_RS01330 0.77 +0.3
249,534 - MMP_RS01330 0.77 -1.1
249,534 - MMP_RS01330 0.77 +0.3
249,555 - MMP_RS01330 0.79 +0.2
249,588 - MMP_RS01330 0.82 -2.4
249,604 + MMP_RS01330 0.84 +0.6
249,714 - -0.6
249,790 - -0.8
249,806 - -0.5
249,854 - MMP_RS01335 0.14 -1.0
249,891 - MMP_RS01335 0.25 -1.5
250,181 + -0.2
250,192 + -1.7
250,202 - +0.7
250,206 + -0.3
250,226 - -1.0
250,226 - -0.7
250,227 + -2.2
250,260 + -2.0
250,265 - -1.7
250,458 - -0.2
250,603 + +0.1
250,606 - -0.1
250,811 - -1.2
250,811 - +0.6
250,812 + -2.1
250,818 + +0.3
250,977 - +0.2
250,993 - -0.1
251,491 + -3.6
251,495 - -1.1

Or see this region's nucleotide sequence