Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00835 and MMP_RS00840 are separated by 14 nucleotides MMP_RS00840 and MMP_RS00845 are separated by 310 nucleotides
MMP_RS00835: MMP_RS00835 - FAD-dependent oxidoreductase, at 155,411 to 156,817
_RS00835
MMP_RS00840: MMP_RS00840 - nitrogenase iron protein, at 156,832 to 157,710
_RS00840
MMP_RS00845: MMP_RS00845 - acetate--CoA ligase, at 158,021 to 159,931
_RS00845
Position (kb)
156
157
158 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 156.052 kb on + strand at 156.133 kb on - strand at 156.168 kb on + strand at 156.194 kb on + strand at 156.256 kb on - strand at 156.260 kb on - strand at 156.560 kb on - strand at 156.561 kb on + strand at 156.565 kb on + strand at 156.565 kb on + strand at 156.565 kb on + strand at 156.597 kb on - strand at 156.734 kb on - strand at 156.737 kb on - strand at 156.740 kb on - strand at 156.943 kb on + strand at 156.962 kb on - strand at 157.191 kb on - strand at 157.766 kb on - strand at 157.767 kb on + strand at 157.770 kb on + strand at 157.770 kb on + strand at 157.774 kb on + strand at 157.775 kb on - strand at 157.789 kb on + strand at 157.789 kb on + strand at 157.789 kb on + strand at 157.789 kb on + strand at 157.791 kb on - strand at 157.807 kb on - strand at 157.812 kb on - strand at 157.813 kb on + strand at 157.851 kb on - strand at 158.040 kb on + strand at 158.387 kb on - strand, within MMP_RS00845 at 158.387 kb on - strand, within MMP_RS00845 at 158.520 kb on - strand, within MMP_RS00845 at 158.624 kb on - strand, within MMP_RS00845 at 158.655 kb on - strand, within MMP_RS00845
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 156,052 + -1.6 156,133 - -1.6 156,168 + -2.5 156,194 + -2.7 156,256 - -2.9 156,260 - -0.5 156,560 - -2.8 156,561 + -1.9 156,565 + +0.4 156,565 + -2.7 156,565 + -0.8 156,597 - -2.9 156,734 - -2.6 156,737 - -0.3 156,740 - -2.8 156,943 + +0.3 156,962 - +1.0 157,191 - +0.6 157,766 - -2.5 157,767 + +1.1 157,770 + +1.0 157,770 + +1.5 157,774 + +0.8 157,775 - -0.7 157,789 + +1.6 157,789 + +1.3 157,789 + +0.9 157,789 + +2.1 157,791 - +1.2 157,807 - -1.0 157,812 - +0.7 157,813 + +0.1 157,851 - +2.1 158,040 + +0.4 158,387 - MMP_RS00845 0.19 -0.6 158,387 - MMP_RS00845 0.19 +0.9 158,520 - MMP_RS00845 0.26 +0.9 158,624 - MMP_RS00845 0.32 -1.4 158,655 - MMP_RS00845 0.33 +0.3
Or see this region's nucleotide sequence