Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00840

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00835 and MMP_RS00840 are separated by 14 nucleotidesMMP_RS00840 and MMP_RS00845 are separated by 310 nucleotides MMP_RS00835: MMP_RS00835 - FAD-dependent oxidoreductase, at 155,411 to 156,817 _RS00835 MMP_RS00840: MMP_RS00840 - nitrogenase iron protein, at 156,832 to 157,710 _RS00840 MMP_RS00845: MMP_RS00845 - acetate--CoA ligase, at 158,021 to 159,931 _RS00845 Position (kb) 156 157 158Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 156.052 kb on + strandat 156.133 kb on - strandat 156.168 kb on + strandat 156.194 kb on + strandat 156.256 kb on - strandat 156.260 kb on - strandat 156.560 kb on - strandat 156.561 kb on + strandat 156.565 kb on + strandat 156.565 kb on + strandat 156.565 kb on + strandat 156.597 kb on - strandat 156.734 kb on - strandat 156.737 kb on - strandat 156.740 kb on - strandat 156.943 kb on + strandat 156.962 kb on - strandat 157.191 kb on - strandat 157.766 kb on - strandat 157.767 kb on + strandat 157.770 kb on + strandat 157.770 kb on + strandat 157.774 kb on + strandat 157.775 kb on - strandat 157.789 kb on + strandat 157.789 kb on + strandat 157.789 kb on + strandat 157.789 kb on + strandat 157.791 kb on - strandat 157.807 kb on - strandat 157.812 kb on - strandat 157.813 kb on + strandat 157.851 kb on - strandat 158.040 kb on + strandat 158.387 kb on - strand, within MMP_RS00845at 158.387 kb on - strand, within MMP_RS00845at 158.520 kb on - strand, within MMP_RS00845at 158.624 kb on - strand, within MMP_RS00845at 158.655 kb on - strand, within MMP_RS00845

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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156,052 + -1.6
156,133 - -1.6
156,168 + -2.5
156,194 + -2.7
156,256 - -2.9
156,260 - -0.5
156,560 - -2.8
156,561 + -1.9
156,565 + +0.4
156,565 + -2.7
156,565 + -0.8
156,597 - -2.9
156,734 - -2.6
156,737 - -0.3
156,740 - -2.8
156,943 + +0.3
156,962 - +1.0
157,191 - +0.6
157,766 - -2.5
157,767 + +1.1
157,770 + +1.0
157,770 + +1.5
157,774 + +0.8
157,775 - -0.7
157,789 + +1.6
157,789 + +1.3
157,789 + +0.9
157,789 + +2.1
157,791 - +1.2
157,807 - -1.0
157,812 - +0.7
157,813 + +0.1
157,851 - +2.1
158,040 + +0.4
158,387 - MMP_RS00845 0.19 -0.6
158,387 - MMP_RS00845 0.19 +0.9
158,520 - MMP_RS00845 0.26 +0.9
158,624 - MMP_RS00845 0.32 -1.4
158,655 - MMP_RS00845 0.33 +0.3

Or see this region's nucleotide sequence