Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00825 and MMP_RS00830 are separated by 15 nucleotides MMP_RS00830 and MMP_RS00835 are separated by 31 nucleotides MMP_RS00835 and MMP_RS00840 are separated by 14 nucleotides
MMP_RS00825: MMP_RS00825 - fumarylacetoacetate hydrolase family protein, at 154,198 to 154,806
_RS00825
MMP_RS00830: MMP_RS00830 - purine phosphoribosyltransferase family protein, at 154,822 to 155,379
_RS00830
MMP_RS00835: MMP_RS00835 - FAD-dependent oxidoreductase, at 155,411 to 156,817
_RS00835
MMP_RS00840: MMP_RS00840 - nitrogenase iron protein, at 156,832 to 157,710
_RS00840
Position (kb)
155
156
157 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 154.681 kb on + strand, within MMP_RS00825 at 154.684 kb on - strand, within MMP_RS00825 at 154.684 kb on - strand, within MMP_RS00825 at 154.711 kb on - strand, within MMP_RS00825 at 154.740 kb on - strand, within MMP_RS00825 at 154.798 kb on - strand at 155.145 kb on + strand, within MMP_RS00830 at 155.309 kb on + strand, within MMP_RS00830 at 155.443 kb on + strand at 155.616 kb on - strand at 155.638 kb on - strand at 155.663 kb on + strand at 155.777 kb on + strand at 156.052 kb on + strand at 156.133 kb on - strand at 156.168 kb on + strand at 156.194 kb on + strand at 156.256 kb on - strand at 156.260 kb on - strand at 156.560 kb on - strand at 156.561 kb on + strand at 156.565 kb on + strand at 156.565 kb on + strand at 156.565 kb on + strand at 156.597 kb on - strand at 156.734 kb on - strand at 156.737 kb on - strand at 156.740 kb on - strand at 156.943 kb on + strand at 156.962 kb on - strand at 157.191 kb on - strand at 157.766 kb on - strand at 157.767 kb on + strand at 157.770 kb on + strand at 157.770 kb on + strand at 157.774 kb on + strand at 157.775 kb on - strand at 157.789 kb on + strand at 157.789 kb on + strand at 157.789 kb on + strand at 157.789 kb on + strand at 157.791 kb on - strand at 157.807 kb on - strand at 157.812 kb on - strand at 157.813 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 154,681 + MMP_RS00825 0.79 +0.2 154,684 - MMP_RS00825 0.80 +0.1 154,684 - MMP_RS00825 0.80 +0.3 154,711 - MMP_RS00825 0.84 +0.5 154,740 - MMP_RS00825 0.89 +0.7 154,798 - +0.5 155,145 + MMP_RS00830 0.58 -0.6 155,309 + MMP_RS00830 0.87 -0.7 155,443 + +0.4 155,616 - -0.2 155,638 - -1.2 155,663 + -2.0 155,777 + -2.4 156,052 + -1.6 156,133 - -1.6 156,168 + -2.5 156,194 + -2.7 156,256 - -2.9 156,260 - -0.5 156,560 - -2.8 156,561 + -1.9 156,565 + +0.4 156,565 + -2.7 156,565 + -0.8 156,597 - -2.9 156,734 - -2.6 156,737 - -0.3 156,740 - -2.8 156,943 + +0.3 156,962 - +1.0 157,191 - +0.6 157,766 - -2.5 157,767 + +1.1 157,770 + +1.0 157,770 + +1.5 157,774 + +0.8 157,775 - -0.7 157,789 + +1.6 157,789 + +1.3 157,789 + +0.9 157,789 + +2.1 157,791 - +1.2 157,807 - -1.0 157,812 - +0.7 157,813 + +0.1
Or see this region's nucleotide sequence