Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00575

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00565 and MMP_RS00570 are separated by 88 nucleotidesMMP_RS00570 and MMP_RS00575 are separated by 118 nucleotidesMMP_RS00575 and MMP_RS00580 are separated by 157 nucleotidesMMP_RS00580 and MMP_RS00585 are separated by 46 nucleotidesMMP_RS00585 and MMP_RS00590 are separated by 8 nucleotidesMMP_RS00590 and MMP_RS00595 are separated by 16 nucleotidesMMP_RS00595 and MMP_RS00600 are separated by 40 nucleotidesMMP_RS00600 and MMP_RS00605 are separated by 16 nucleotidesMMP_RS00605 and MMP_RS00610 are separated by 33 nucleotidesMMP_RS00610 and MMP_RS00615 are separated by 20 nucleotides MMP_RS00565: MMP_RS00565 - CBS domain-containing protein, at 110,490 to 110,975 _RS00565 MMP_RS00570: MMP_RS00570 - protein-L-isoaspartate O-methyltransferase, at 111,064 to 111,702 _RS00570 MMP_RS00575: MMP_RS00575 - pyridoxal 5'-phosphate synthase lyase subunit PdxS, at 111,821 to 112,720 _RS00575 MMP_RS00580: MMP_RS00580 - tRNA-Thr, at 112,878 to 112,951 _RS00580 MMP_RS00585: MMP_RS00585 - tRNA-Pro, at 112,998 to 113,074 _RS00585 MMP_RS00590: MMP_RS00590 - tRNA-Tyr, at 113,083 to 113,156 _RS00590 MMP_RS00595: MMP_RS00595 - tRNA-Lys, at 113,173 to 113,246 _RS00595 MMP_RS00600: MMP_RS00600 - 5S ribosomal RNA, at 113,287 to 113,401 _RS00600 MMP_RS00605: MMP_RS00605 - tRNA-Asp, at 113,418 to 113,492 _RS00605 MMP_RS00610: MMP_RS00610 - tRNA-Lys, at 113,526 to 113,599 _RS00610 MMP_RS00615: MMP_RS00615 - tRNA-Asp, at 113,620 to 113,694 _RS00615 Position (kb) 111 112 113Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 110.823 kb on - strand, within MMP_RS00565at 110.882 kb on - strand, within MMP_RS00565at 110.934 kb on + strandat 110.944 kb on - strandat 111.004 kb on - strandat 111.004 kb on - strandat 111.005 kb on + strandat 111.005 kb on + strandat 111.006 kb on - strandat 111.006 kb on - strandat 111.006 kb on - strandat 111.007 kb on + strandat 111.007 kb on + strandat 111.007 kb on + strandat 111.007 kb on + strandat 111.007 kb on + strandat 111.022 kb on - strandat 111.024 kb on - strandat 111.024 kb on - strandat 111.025 kb on + strandat 111.025 kb on + strandat 111.025 kb on + strandat 111.061 kb on - strandat 111.061 kb on - strandat 111.072 kb on + strandat 111.072 kb on + strandat 111.115 kb on - strandat 111.237 kb on - strand, within MMP_RS00570at 111.302 kb on - strand, within MMP_RS00570at 111.700 kb on - strandat 111.786 kb on - strandat 111.789 kb on - strandat 112.635 kb on - strandat 112.669 kb on - strandat 112.734 kb on - strandat 112.734 kb on - strandat 112.751 kb on - strandat 112.752 kb on + strandat 112.777 kb on - strandat 112.798 kb on - strandat 112.798 kb on - strandat 112.799 kb on + strandat 112.799 kb on + strandat 112.809 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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110,823 - MMP_RS00565 0.69 +0.7
110,882 - MMP_RS00565 0.81 +1.0
110,934 + +1.5
110,944 - -0.1
111,004 - +0.8
111,004 - -1.5
111,005 + +0.6
111,005 + -0.2
111,006 - +0.8
111,006 - -0.1
111,006 - +0.2
111,007 + +0.8
111,007 + +0.8
111,007 + +0.6
111,007 + -0.4
111,007 + -1.9
111,022 - +1.8
111,024 - -0.4
111,024 - +0.5
111,025 + +1.0
111,025 + -1.3
111,025 + -0.4
111,061 - -0.0
111,061 - +1.0
111,072 + -0.2
111,072 + -0.0
111,115 - +0.8
111,237 - MMP_RS00570 0.27 -0.2
111,302 - MMP_RS00570 0.37 -0.0
111,700 - +0.1
111,786 - -0.2
111,789 - -0.5
112,635 - -4.1
112,669 - -0.0
112,734 - -0.3
112,734 - +0.5
112,751 - +0.3
112,752 + +0.7
112,777 - +0.5
112,798 - -0.4
112,798 - -0.2
112,799 + -0.7
112,799 + +0.0
112,809 - +0.8

Or see this region's nucleotide sequence