Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00270

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00265 and MMP_RS00270 are separated by 72 nucleotidesMMP_RS00270 and MMP_RS00275 are separated by 13 nucleotides MMP_RS00265: MMP_RS00265 - type 2 isopentenyl-diphosphate Delta-isomerase, at 60,428 to 61,495 _RS00265 MMP_RS00270: MMP_RS00270 - RNase J family beta-CASP ribonuclease, at 61,568 to 62,914 _RS00270 MMP_RS00275: MMP_RS00275 - polyprenyl synthetase family protein, at 62,928 to 63,881 _RS00275 Position (kb) 61 62 63Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 60.700 kb on + strandat 60.917 kb on + strandat 61.531 kb on - strandat 61.591 kb on + strandat 62.257 kb on + strandat 62.511 kb on + strandat 62.996 kb on - strandat 63.055 kb on + strandat 63.293 kb on - strandat 63.759 kb on - strandat 63.804 kb on - strandat 63.889 kb on - strandat 63.897 kb on - strandat 63.898 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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60,700 + +0.8
60,917 + -0.7
61,531 - -4.4
61,591 + -0.9
62,257 + -2.1
62,511 + -2.3
62,996 - -2.5
63,055 + -0.7
63,293 - -4.0
63,759 - -2.3
63,804 - -2.3
63,889 - +0.0
63,897 - -0.2
63,898 + +0.3

Or see this region's nucleotide sequence