Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00215

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00210 and MMP_RS00215 are separated by 610 nucleotidesMMP_RS00215 and MMP_RS00220 are separated by 20 nucleotidesMMP_RS00220 and MMP_RS00225 are separated by 25 nucleotides MMP_RS00210: MMP_RS00210 - helix-turn-helix domain-containing protein, at 49,388 to 49,909 _RS00210 MMP_RS00215: MMP_RS00215 - AAA family ATPase, at 50,520 to 51,746 _RS00215 MMP_RS00220: MMP_RS00220 - GTP cyclohydrolase MptA, at 51,767 to 52,714 _RS00220 MMP_RS00225: MMP_RS00225 - ATP-grasp domain-containing protein, at 52,740 to 53,789 _RS00225 Position (kb) 50 51 52Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 49.523 kb on + strandat 49.574 kb on - strandat 49.799 kb on - strandat 50.010 kb on + strandat 50.364 kb on - strandat 50.449 kb on + strandat 50.468 kb on + strandat 50.468 kb on + strandat 50.765 kb on + strandat 50.770 kb on + strandat 51.686 kb on + strandat 51.944 kb on + strandat 51.987 kb on - strandat 52.035 kb on - strandat 52.084 kb on + strandat 52.100 kb on - strandat 52.101 kb on + strandat 52.101 kb on + strandat 52.101 kb on + strandat 52.180 kb on + strandat 52.289 kb on + strandat 52.346 kb on + strandat 52.406 kb on - strandat 52.409 kb on + strandat 52.466 kb on - strandat 52.503 kb on - strandat 52.583 kb on - strandat 52.670 kb on + strandat 52.683 kb on - strandat 52.684 kb on + strandat 52.684 kb on + strandat 52.684 kb on + strandat 52.696 kb on - strandat 52.697 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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49,523 + -1.6
49,574 - -0.6
49,799 - -0.6
50,010 + -0.0
50,364 - +0.6
50,449 + -1.5
50,468 + -2.1
50,468 + -3.0
50,765 + -4.9
50,770 + -2.2
51,686 + -3.3
51,944 + -3.0
51,987 - -4.1
52,035 - -2.4
52,084 + -4.1
52,100 - -0.9
52,101 + -2.1
52,101 + -3.2
52,101 + -1.4
52,180 + -1.4
52,289 + -3.4
52,346 + -5.7
52,406 - -3.5
52,409 + -3.9
52,466 - -3.0
52,503 - -2.9
52,583 - -3.5
52,670 + -0.8
52,683 - -4.3
52,684 + -2.1
52,684 + -3.3
52,684 + -2.3
52,696 - -2.0
52,697 + -0.2

Or see this region's nucleotide sequence