Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00205

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00200 and MMP_RS00205 are separated by 15 nucleotidesMMP_RS00205 and MMP_RS00210 are separated by 632 nucleotides MMP_RS00200: MMP_RS00200 - minichromosome maintenance protein MCM, at 45,639 to 47,657 _RS00200 MMP_RS00205: MMP_RS00205 - helix-turn-helix domain-containing protein, at 47,673 to 48,755 _RS00205 MMP_RS00210: MMP_RS00210 - helix-turn-helix domain-containing protein, at 49,388 to 49,909 _RS00210 Position (kb) 47 48 49Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 46.853 kb on - strandat 46.996 kb on - strandat 47.118 kb on + strandat 47.122 kb on - strandat 47.585 kb on + strandat 48.672 kb on + strandat 48.779 kb on - strandat 48.830 kb on + strandat 48.833 kb on - strandat 48.833 kb on - strandat 48.834 kb on + strandat 48.834 kb on + strandat 48.851 kb on - strandat 48.855 kb on + strandat 48.855 kb on + strandat 48.859 kb on - strandat 48.860 kb on + strandat 48.862 kb on - strandat 48.862 kb on - strandat 48.867 kb on - strandat 48.868 kb on + strandat 48.868 kb on + strandat 48.875 kb on + strandat 48.879 kb on + strandat 48.906 kb on - strandat 48.907 kb on + strandat 49.334 kb on + strandat 49.334 kb on + strandat 49.350 kb on + strandat 49.357 kb on - strandat 49.361 kb on - strandat 49.361 kb on - strandat 49.361 kb on - strandat 49.386 kb on - strandat 49.389 kb on - strandat 49.389 kb on - strandat 49.389 kb on - strandat 49.394 kb on + strandat 49.458 kb on + strandat 49.517 kb on - strandat 49.523 kb on + strandat 49.574 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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46,853 - +1.4
46,996 - -5.1
47,118 + -2.2
47,122 - -0.2
47,585 + -2.7
48,672 + -0.0
48,779 - +0.0
48,830 + +0.7
48,833 - +0.3
48,833 - +0.6
48,834 + -0.5
48,834 + -0.1
48,851 - +0.5
48,855 + +0.8
48,855 + -1.1
48,859 - -0.4
48,860 + +0.5
48,862 - -2.4
48,862 - -3.6
48,867 - +0.3
48,868 + -0.1
48,868 + -0.5
48,875 + +0.8
48,879 + +0.5
48,906 - +1.1
48,907 + +0.1
49,334 + +0.5
49,334 + -1.9
49,350 + +1.0
49,357 - -0.5
49,361 - +0.2
49,361 - +0.2
49,361 - +0.2
49,386 - -1.1
49,389 - +0.4
49,389 - +0.5
49,389 - -0.2
49,394 + -0.8
49,458 + -1.2
49,517 - -2.2
49,523 + -1.6
49,574 - -0.6

Or see this region's nucleotide sequence