Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00200

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00190 and MMP_RS00195 are separated by 64 nucleotidesMMP_RS00195 and MMP_RS00200 are separated by 223 nucleotidesMMP_RS00200 and MMP_RS00205 are separated by 15 nucleotides MMP_RS00190: MMP_RS00190 - cobyrinic acid a c-diamide synthase, at 43,261 to 44,712 _RS00190 MMP_RS00195: MMP_RS00195 - DUF4013 domain-containing protein, at 44,777 to 45,415 _RS00195 MMP_RS00200: MMP_RS00200 - minichromosome maintenance protein MCM, at 45,639 to 47,657 _RS00200 MMP_RS00205: MMP_RS00205 - helix-turn-helix domain-containing protein, at 47,673 to 48,755 _RS00205 Position (kb) 45 46 47 48Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 44.656 kb on + strandat 44.700 kb on + strandat 44.703 kb on - strandat 44.743 kb on - strandat 44.811 kb on - strandat 44.813 kb on - strandat 44.813 kb on - strandat 44.814 kb on + strandat 44.841 kb on + strand, within MMP_RS00195at 44.909 kb on - strand, within MMP_RS00195at 44.910 kb on + strand, within MMP_RS00195at 44.916 kb on + strand, within MMP_RS00195at 44.919 kb on - strand, within MMP_RS00195at 44.919 kb on - strand, within MMP_RS00195at 44.920 kb on + strand, within MMP_RS00195at 44.924 kb on - strand, within MMP_RS00195at 44.924 kb on - strand, within MMP_RS00195at 44.924 kb on - strand, within MMP_RS00195at 44.927 kb on - strand, within MMP_RS00195at 44.927 kb on - strand, within MMP_RS00195at 44.927 kb on - strand, within MMP_RS00195at 44.928 kb on + strand, within MMP_RS00195at 44.929 kb on - strand, within MMP_RS00195at 44.930 kb on + strand, within MMP_RS00195at 44.930 kb on + strand, within MMP_RS00195at 44.930 kb on + strand, within MMP_RS00195at 44.930 kb on + strand, within MMP_RS00195at 44.932 kb on + strand, within MMP_RS00195at 44.945 kb on + strand, within MMP_RS00195at 44.978 kb on + strand, within MMP_RS00195at 45.010 kb on + strand, within MMP_RS00195at 45.025 kb on - strand, within MMP_RS00195at 45.045 kb on + strand, within MMP_RS00195at 45.060 kb on + strand, within MMP_RS00195at 45.063 kb on + strand, within MMP_RS00195at 45.066 kb on + strand, within MMP_RS00195at 45.076 kb on - strand, within MMP_RS00195at 45.076 kb on - strand, within MMP_RS00195at 45.076 kb on - strand, within MMP_RS00195at 45.076 kb on - strand, within MMP_RS00195at 45.080 kb on + strand, within MMP_RS00195at 45.080 kb on + strand, within MMP_RS00195at 45.124 kb on - strand, within MMP_RS00195at 45.155 kb on - strand, within MMP_RS00195at 45.163 kb on - strand, within MMP_RS00195at 45.163 kb on - strand, within MMP_RS00195at 45.163 kb on - strand, within MMP_RS00195at 45.163 kb on - strand, within MMP_RS00195at 45.164 kb on + strand, within MMP_RS00195at 45.164 kb on + strand, within MMP_RS00195at 45.167 kb on - strand, within MMP_RS00195at 45.168 kb on + strand, within MMP_RS00195at 45.184 kb on - strand, within MMP_RS00195at 45.184 kb on - strand, within MMP_RS00195at 45.184 kb on - strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.186 kb on - strand, within MMP_RS00195at 45.186 kb on - strand, within MMP_RS00195at 45.186 kb on - strand, within MMP_RS00195at 45.186 kb on - strand, within MMP_RS00195at 45.186 kb on - strand, within MMP_RS00195at 45.186 kb on - strand, within MMP_RS00195at 45.186 kb on - strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.188 kb on - strand, within MMP_RS00195at 45.188 kb on - strand, within MMP_RS00195at 45.188 kb on - strand, within MMP_RS00195at 45.188 kb on - strand, within MMP_RS00195at 45.189 kb on + strand, within MMP_RS00195at 45.189 kb on + strand, within MMP_RS00195at 45.189 kb on + strand, within MMP_RS00195at 45.189 kb on + strand, within MMP_RS00195at 45.189 kb on + strand, within MMP_RS00195at 45.191 kb on - strand, within MMP_RS00195at 45.191 kb on - strand, within MMP_RS00195at 45.192 kb on + strand, within MMP_RS00195at 45.192 kb on + strand, within MMP_RS00195at 45.193 kb on - strand, within MMP_RS00195at 45.194 kb on + strand, within MMP_RS00195at 45.194 kb on + strand, within MMP_RS00195at 45.195 kb on - strand, within MMP_RS00195at 45.195 kb on - strand, within MMP_RS00195at 45.195 kb on - strand, within MMP_RS00195at 45.195 kb on - strand, within MMP_RS00195at 45.196 kb on + strand, within MMP_RS00195at 45.196 kb on + strand, within MMP_RS00195at 45.201 kb on + strand, within MMP_RS00195at 45.221 kb on - strand, within MMP_RS00195at 45.276 kb on + strand, within MMP_RS00195at 45.394 kb on - strandat 45.428 kb on - strandat 45.434 kb on + strandat 45.457 kb on - strandat 45.458 kb on + strandat 45.536 kb on + strandat 45.569 kb on - strandat 45.569 kb on - strandat 45.586 kb on + strandat 45.588 kb on - strandat 45.589 kb on + strandat 45.590 kb on - strandat 45.591 kb on + strandat 45.591 kb on + strandat 45.593 kb on + strandat 45.593 kb on + strandat 45.593 kb on + strandat 45.607 kb on + strandat 45.607 kb on + strandat 45.607 kb on + strandat 45.607 kb on + strandat 45.609 kb on + strandat 45.746 kb on + strandat 46.237 kb on + strandat 46.242 kb on + strandat 46.353 kb on + strandat 46.459 kb on - strandat 46.853 kb on - strandat 46.996 kb on - strandat 47.118 kb on + strandat 47.122 kb on - strandat 47.585 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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44,656 + -1.8
44,700 + +0.8
44,703 - +0.3
44,743 - +0.7
44,811 - +0.4
44,813 - -0.2
44,813 - +1.6
44,814 + +0.7
44,841 + MMP_RS00195 0.10 +0.1
44,909 - MMP_RS00195 0.21 +0.7
44,910 + MMP_RS00195 0.21 +1.1
44,916 + MMP_RS00195 0.22 +0.5
44,919 - MMP_RS00195 0.22 +1.2
44,919 - MMP_RS00195 0.22 -0.5
44,920 + MMP_RS00195 0.22 +1.3
44,924 - MMP_RS00195 0.23 +0.3
44,924 - MMP_RS00195 0.23 +0.2
44,924 - MMP_RS00195 0.23 -0.4
44,927 - MMP_RS00195 0.23 -0.5
44,927 - MMP_RS00195 0.23 -0.4
44,927 - MMP_RS00195 0.23 -0.9
44,928 + MMP_RS00195 0.24 +0.5
44,929 - MMP_RS00195 0.24 +0.1
44,930 + MMP_RS00195 0.24 -0.6
44,930 + MMP_RS00195 0.24 +0.7
44,930 + MMP_RS00195 0.24 +1.2
44,930 + MMP_RS00195 0.24 +0.2
44,932 + MMP_RS00195 0.24 -1.2
44,945 + MMP_RS00195 0.26 +0.0
44,978 + MMP_RS00195 0.31 -0.7
45,010 + MMP_RS00195 0.36 +0.9
45,025 - MMP_RS00195 0.39 +1.6
45,045 + MMP_RS00195 0.42 +0.2
45,060 + MMP_RS00195 0.44 +1.4
45,063 + MMP_RS00195 0.45 +1.2
45,066 + MMP_RS00195 0.45 +0.0
45,076 - MMP_RS00195 0.47 -0.1
45,076 - MMP_RS00195 0.47 +0.7
45,076 - MMP_RS00195 0.47 +1.3
45,076 - MMP_RS00195 0.47 -0.3
45,080 + MMP_RS00195 0.47 +0.7
45,080 + MMP_RS00195 0.47 +0.1
45,124 - MMP_RS00195 0.54 +0.9
45,155 - MMP_RS00195 0.59 -1.2
45,163 - MMP_RS00195 0.60 +0.6
45,163 - MMP_RS00195 0.60 +0.9
45,163 - MMP_RS00195 0.60 +0.0
45,163 - MMP_RS00195 0.60 +1.5
45,164 + MMP_RS00195 0.61 +1.1
45,164 + MMP_RS00195 0.61 +0.8
45,167 - MMP_RS00195 0.61 -0.1
45,168 + MMP_RS00195 0.61 +0.9
45,184 - MMP_RS00195 0.64 +0.2
45,184 - MMP_RS00195 0.64 +1.2
45,184 - MMP_RS00195 0.64 +1.1
45,185 + MMP_RS00195 0.64 +0.3
45,185 + MMP_RS00195 0.64 -0.7
45,185 + MMP_RS00195 0.64 -0.6
45,185 + MMP_RS00195 0.64 +0.5
45,185 + MMP_RS00195 0.64 +0.7
45,185 + MMP_RS00195 0.64 -0.4
45,185 + MMP_RS00195 0.64 +0.4
45,185 + MMP_RS00195 0.64 +1.9
45,185 + MMP_RS00195 0.64 +0.8
45,185 + MMP_RS00195 0.64 +0.2
45,185 + MMP_RS00195 0.64 +0.4
45,186 - MMP_RS00195 0.64 +1.3
45,186 - MMP_RS00195 0.64 +0.6
45,186 - MMP_RS00195 0.64 +0.7
45,186 - MMP_RS00195 0.64 -0.7
45,186 - MMP_RS00195 0.64 +0.4
45,186 - MMP_RS00195 0.64 +0.3
45,186 - MMP_RS00195 0.64 +0.3
45,187 + MMP_RS00195 0.64 +0.6
45,187 + MMP_RS00195 0.64 +0.5
45,187 + MMP_RS00195 0.64 +0.9
45,187 + MMP_RS00195 0.64 +0.3
45,187 + MMP_RS00195 0.64 -0.7
45,187 + MMP_RS00195 0.64 +0.4
45,187 + MMP_RS00195 0.64 +0.3
45,187 + MMP_RS00195 0.64 +2.1
45,187 + MMP_RS00195 0.64 +0.0
45,187 + MMP_RS00195 0.64 +0.1
45,187 + MMP_RS00195 0.64 +0.4
45,187 + MMP_RS00195 0.64 +0.6
45,187 + MMP_RS00195 0.64 +0.1
45,187 + MMP_RS00195 0.64 +0.3
45,187 + MMP_RS00195 0.64 +0.3
45,187 + MMP_RS00195 0.64 +0.2
45,187 + MMP_RS00195 0.64 +1.3
45,187 + MMP_RS00195 0.64 +1.1
45,187 + MMP_RS00195 0.64 +0.3
45,187 + MMP_RS00195 0.64 +0.6
45,188 - MMP_RS00195 0.64 +1.0
45,188 - MMP_RS00195 0.64 +0.4
45,188 - MMP_RS00195 0.64 +0.0
45,188 - MMP_RS00195 0.64 +0.2
45,189 + MMP_RS00195 0.64 +0.4
45,189 + MMP_RS00195 0.64 +0.9
45,189 + MMP_RS00195 0.64 +0.2
45,189 + MMP_RS00195 0.64 -0.4
45,189 + MMP_RS00195 0.64 +0.2
45,191 - MMP_RS00195 0.65 +0.0
45,191 - MMP_RS00195 0.65 -0.1
45,192 + MMP_RS00195 0.65 -0.1
45,192 + MMP_RS00195 0.65 +0.2
45,193 - MMP_RS00195 0.65 -0.2
45,194 + MMP_RS00195 0.65 +0.2
45,194 + MMP_RS00195 0.65 +1.2
45,195 - MMP_RS00195 0.65 +1.0
45,195 - MMP_RS00195 0.65 +0.1
45,195 - MMP_RS00195 0.65 +0.3
45,195 - MMP_RS00195 0.65 -0.3
45,196 + MMP_RS00195 0.66 +0.7
45,196 + MMP_RS00195 0.66 +0.0
45,201 + MMP_RS00195 0.66 -0.2
45,221 - MMP_RS00195 0.69 -1.4
45,276 + MMP_RS00195 0.78 +1.4
45,394 - -0.4
45,428 - +0.5
45,434 + -0.9
45,457 - +1.0
45,458 + +0.3
45,536 + +0.6
45,569 - +1.5
45,569 - +0.1
45,586 + +0.6
45,588 - +1.0
45,589 + +0.3
45,590 - -3.0
45,591 + +0.9
45,591 + -0.2
45,593 + +0.4
45,593 + -1.3
45,593 + -0.9
45,607 + -2.4
45,607 + +0.3
45,607 + +0.4
45,607 + +0.4
45,609 + -0.3
45,746 + -2.2
46,237 + -2.7
46,242 + +1.4
46,353 + -2.2
46,459 - -0.2
46,853 - +1.4
46,996 - -5.1
47,118 + -2.2
47,122 - -0.2
47,585 + -2.7

Or see this region's nucleotide sequence