Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00160

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00150 and MMP_RS00155 are separated by 53 nucleotidesMMP_RS00155 and MMP_RS00160 are separated by 67 nucleotidesMMP_RS00160 and MMP_RS00165 are separated by 467 nucleotidesMMP_RS00165 and MMP_RS00170 are separated by 56 nucleotides MMP_RS00150: MMP_RS00150 - AAA family ATPase, at 31,747 to 32,862 _RS00150 MMP_RS00155: MMP_RS00155 - heavy metal-binding domain-containing protein, at 32,916 to 33,188 _RS00155 MMP_RS00160: MMP_RS00160 - DNA polymerase II large subunit, at 33,256 to 36,651 _RS00160 MMP_RS00165: MMP_RS00165 - 5S ribosomal RNA, at 37,119 to 37,233 _RS00165 MMP_RS00170: MMP_RS00170 - 23S ribosomal RNA, at 37,290 to 40,257 _RS00170 Position (kb) 33 34 35 36 37Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 32.304 kb on + strand, within MMP_RS00150at 32.304 kb on + strand, within MMP_RS00150at 32.304 kb on + strand, within MMP_RS00150at 32.402 kb on - strand, within MMP_RS00150at 32.474 kb on - strand, within MMP_RS00150at 32.475 kb on + strand, within MMP_RS00150at 32.860 kb on - strandat 32.909 kb on - strandat 32.918 kb on + strandat 32.947 kb on - strand, within MMP_RS00155at 32.953 kb on - strand, within MMP_RS00155at 33.015 kb on - strand, within MMP_RS00155at 33.016 kb on + strand, within MMP_RS00155at 33.016 kb on + strand, within MMP_RS00155at 33.016 kb on + strand, within MMP_RS00155at 33.217 kb on - strandat 33.231 kb on + strandat 33.232 kb on - strandat 33.232 kb on - strandat 33.233 kb on + strandat 33.233 kb on + strandat 33.233 kb on + strandat 33.234 kb on - strandat 33.235 kb on + strandat 33.666 kb on - strandat 34.830 kb on - strandat 35.221 kb on - strandat 35.331 kb on - strandat 35.567 kb on - strandat 36.578 kb on - strandat 36.590 kb on + strandat 36.713 kb on - strandat 36.713 kb on - strandat 36.713 kb on - strandat 36.714 kb on + strandat 36.714 kb on + strandat 36.714 kb on + strandat 36.714 kb on + strandat 36.729 kb on + strandat 36.744 kb on + strandat 36.750 kb on - strandat 36.751 kb on + strandat 36.760 kb on - strandat 36.760 kb on - strandat 36.976 kb on - strandat 36.977 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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32,304 + MMP_RS00150 0.50 -1.2
32,304 + MMP_RS00150 0.50 -0.2
32,304 + MMP_RS00150 0.50 -0.3
32,402 - MMP_RS00150 0.59 -0.5
32,474 - MMP_RS00150 0.65 +0.4
32,475 + MMP_RS00150 0.65 +0.2
32,860 - +0.4
32,909 - +0.1
32,918 + +0.4
32,947 - MMP_RS00155 0.11 +1.3
32,953 - MMP_RS00155 0.14 -0.3
33,015 - MMP_RS00155 0.36 +0.7
33,016 + MMP_RS00155 0.37 +0.6
33,016 + MMP_RS00155 0.37 +0.7
33,016 + MMP_RS00155 0.37 +0.6
33,217 - -0.1
33,231 + -0.9
33,232 - +0.6
33,232 - -1.6
33,233 + +0.1
33,233 + +1.5
33,233 + +0.7
33,234 - +0.7
33,235 + +0.2
33,666 - -2.5
34,830 - -3.9
35,221 - -4.8
35,331 - -0.2
35,567 - -2.6
36,578 - -4.1
36,590 + -3.3
36,713 - +0.1
36,713 - +0.6
36,713 - -0.3
36,714 + -1.3
36,714 + +0.3
36,714 + +0.4
36,714 + +1.1
36,729 + -0.1
36,744 + +0.3
36,750 - +0.4
36,751 + +0.3
36,760 - +0.1
36,760 - +0.4
36,976 - -1.3
36,977 + -3.7

Or see this region's nucleotide sequence