Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00070

Experiment: H2 N-free with 10mM L-Aspartic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS00065 and MMP_RS00070 are separated by 28 nucleotidesMMP_RS00070 and MMP_RS00075 are separated by 10 nucleotides MMP_RS00065: MMP_RS00065 - geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase, at 16,803 to 17,573 _RS00065 MMP_RS00070: MMP_RS00070 - DNA-directed DNA polymerase II small subunit, at 17,602 to 19,359 _RS00070 MMP_RS00075: MMP_RS00075 - hypothetical protein, at 19,370 to 20,479 _RS00075 Position (kb) 17 18 19 20Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 16.605 kb on + strandat 16.628 kb on + strandat 16.647 kb on + strandat 16.648 kb on - strandat 16.655 kb on + strandat 16.655 kb on + strandat 16.682 kb on - strandat 16.683 kb on + strandat 16.683 kb on + strandat 16.737 kb on + strandat 16.782 kb on + strandat 16.791 kb on + strandat 16.883 kb on + strandat 17.295 kb on - strandat 17.552 kb on + strandat 17.596 kb on - strandat 17.956 kb on - strandat 18.316 kb on - strandat 18.362 kb on + strandat 18.742 kb on - strandat 19.130 kb on - strandat 19.527 kb on + strandat 19.562 kb on - strandat 19.563 kb on + strandat 19.563 kb on + strandat 19.859 kb on + strandat 20.020 kb on + strandat 20.084 kb on - strandat 20.135 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
remove
16,605 + +0.8
16,628 + +0.4
16,647 + +0.4
16,648 - -0.2
16,655 + +0.3
16,655 + -0.5
16,682 - +0.6
16,683 + +0.2
16,683 + +1.3
16,737 + +0.2
16,782 + -3.0
16,791 + -2.1
16,883 + -1.4
17,295 - -3.7
17,552 + +0.3
17,596 - -0.3
17,956 - -0.6
18,316 - -1.2
18,362 + -2.2
18,742 - -1.1
19,130 - -0.2
19,527 + -2.0
19,562 - -2.0
19,563 + -2.0
19,563 + -3.9
19,859 + -1.7
20,020 + -2.3
20,084 - +0.9
20,135 - -1.4

Or see this region's nucleotide sequence