Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00065

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00060 and MMP_RS00065 are separated by 381 nucleotidesMMP_RS00065 and MMP_RS00070 are separated by 28 nucleotides MMP_RS00060: MMP_RS00060 - 3-dehydroquinate synthase II, at 15,336 to 16,421 _RS00060 MMP_RS00065: MMP_RS00065 - geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase, at 16,803 to 17,573 _RS00065 MMP_RS00070: MMP_RS00070 - DNA-directed DNA polymerase II small subunit, at 17,602 to 19,359 _RS00070 Position (kb) 16 17 18Strain fitness (log2 ratio) -3 -2 -1 0 1at 16.082 kb on + strand, within MMP_RS00060at 16.458 kb on + strandat 16.524 kb on - strandat 16.525 kb on + strandat 16.525 kb on + strandat 16.525 kb on + strandat 16.536 kb on - strandat 16.536 kb on - strandat 16.536 kb on - strandat 16.537 kb on + strandat 16.555 kb on - strandat 16.556 kb on + strandat 16.556 kb on + strandat 16.556 kb on + strandat 16.569 kb on - strandat 16.578 kb on - strandat 16.579 kb on + strandat 16.605 kb on + strandat 16.628 kb on + strandat 16.647 kb on + strandat 16.648 kb on - strandat 16.655 kb on + strandat 16.655 kb on + strandat 16.682 kb on - strandat 16.683 kb on + strandat 16.683 kb on + strandat 16.737 kb on + strandat 16.782 kb on + strandat 16.791 kb on + strandat 16.883 kb on + strandat 17.295 kb on - strandat 17.552 kb on + strandat 17.596 kb on - strandat 17.956 kb on - strandat 18.316 kb on - strandat 18.362 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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16,082 + MMP_RS00060 0.69 -2.2
16,458 + +0.2
16,524 - +0.4
16,525 + +0.5
16,525 + -1.1
16,525 + +1.3
16,536 - -0.7
16,536 - +0.6
16,536 - +0.3
16,537 + +0.6
16,555 - -0.3
16,556 + +1.0
16,556 + +0.9
16,556 + +0.2
16,569 - -0.1
16,578 - +0.5
16,579 + +0.0
16,605 + +0.8
16,628 + +0.4
16,647 + +0.4
16,648 - -0.2
16,655 + +0.3
16,655 + -0.5
16,682 - +0.6
16,683 + +0.2
16,683 + +1.3
16,737 + +0.2
16,782 + -3.0
16,791 + -2.1
16,883 + -1.4
17,295 - -3.7
17,552 + +0.3
17,596 - -0.3
17,956 - -0.6
18,316 - -1.2
18,362 + -2.2

Or see this region's nucleotide sequence