Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20110 and HSERO_RS20115 are separated by 494 nucleotides HSERO_RS20115 and HSERO_RS20120 are separated by 461 nucleotides
HSERO_RS20110: HSERO_RS20110 - ABC transporter substrate-binding protein, at 4,614,091 to 4,615,158
_RS20110
HSERO_RS20115: HSERO_RS20115 - methyl-accepting chemotaxis protein, at 4,615,653 to 4,617,287
_RS20115
HSERO_RS20120: HSERO_RS20120 - peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins protein, at 4,617,749 to 4,618,588
_RS20120
Position (kb) 4615
4616
4617
4618 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4614.762 kb on + strand, within HSERO_RS20110 at 4614.982 kb on + strand at 4615.004 kb on + strand, within HSERO_RS20110 at 4615.018 kb on - strand at 4615.112 kb on + strand at 4615.128 kb on - strand at 4615.243 kb on + strand at 4615.258 kb on + strand at 4615.266 kb on - strand at 4615.271 kb on - strand at 4615.281 kb on - strand at 4615.468 kb on - strand at 4615.603 kb on - strand at 4615.642 kb on - strand at 4615.736 kb on + strand at 4615.756 kb on - strand at 4615.834 kb on - strand, within HSERO_RS20115 at 4615.866 kb on - strand, within HSERO_RS20115 at 4615.866 kb on - strand, within HSERO_RS20115 at 4615.901 kb on - strand, within HSERO_RS20115 at 4615.991 kb on - strand, within HSERO_RS20115 at 4616.425 kb on - strand, within HSERO_RS20115 at 4616.512 kb on + strand, within HSERO_RS20115 at 4616.554 kb on + strand, within HSERO_RS20115 at 4616.677 kb on - strand, within HSERO_RS20115 at 4616.781 kb on + strand, within HSERO_RS20115 at 4616.850 kb on + strand, within HSERO_RS20115 at 4616.853 kb on - strand, within HSERO_RS20115 at 4616.855 kb on + strand, within HSERO_RS20115 at 4616.896 kb on - strand, within HSERO_RS20115 at 4616.921 kb on - strand, within HSERO_RS20115 at 4616.963 kb on + strand, within HSERO_RS20115 at 4617.086 kb on + strand, within HSERO_RS20115 at 4617.109 kb on - strand, within HSERO_RS20115 at 4617.236 kb on - strand at 4617.296 kb on - strand at 4617.372 kb on - strand at 4617.445 kb on - strand at 4617.597 kb on + strand at 4617.687 kb on - strand at 4617.724 kb on - strand at 4617.782 kb on + strand at 4617.948 kb on + strand, within HSERO_RS20120 at 4617.948 kb on + strand, within HSERO_RS20120 at 4617.948 kb on + strand, within HSERO_RS20120 at 4617.948 kb on + strand, within HSERO_RS20120 at 4617.953 kb on + strand, within HSERO_RS20120 at 4617.953 kb on + strand, within HSERO_RS20120 at 4617.956 kb on - strand, within HSERO_RS20120 at 4618.001 kb on + strand, within HSERO_RS20120 at 4618.062 kb on + strand, within HSERO_RS20120
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 4,614,762 + HSERO_RS20110 0.63 -0.3 4,614,982 + +0.4 4,615,004 + HSERO_RS20110 0.85 -0.1 4,615,018 - +3.5 4,615,112 + +0.1 4,615,128 - -0.2 4,615,243 + +0.3 4,615,258 + +1.3 4,615,266 - +2.9 4,615,271 - -0.7 4,615,281 - -1.8 4,615,468 - +1.4 4,615,603 - +0.3 4,615,642 - +0.7 4,615,736 + -1.8 4,615,756 - +0.6 4,615,834 - HSERO_RS20115 0.11 -0.4 4,615,866 - HSERO_RS20115 0.13 +0.9 4,615,866 - HSERO_RS20115 0.13 -0.2 4,615,901 - HSERO_RS20115 0.15 +1.3 4,615,991 - HSERO_RS20115 0.21 +2.5 4,616,425 - HSERO_RS20115 0.47 -1.0 4,616,512 + HSERO_RS20115 0.53 +0.3 4,616,554 + HSERO_RS20115 0.55 +0.5 4,616,677 - HSERO_RS20115 0.63 -0.0 4,616,781 + HSERO_RS20115 0.69 +0.2 4,616,850 + HSERO_RS20115 0.73 -2.7 4,616,853 - HSERO_RS20115 0.73 -0.3 4,616,855 + HSERO_RS20115 0.74 +0.1 4,616,896 - HSERO_RS20115 0.76 +0.2 4,616,921 - HSERO_RS20115 0.78 +0.6 4,616,963 + HSERO_RS20115 0.80 -0.0 4,617,086 + HSERO_RS20115 0.88 +0.2 4,617,109 - HSERO_RS20115 0.89 +0.2 4,617,236 - +0.4 4,617,296 - -0.3 4,617,372 - -0.1 4,617,445 - +2.5 4,617,597 + +0.3 4,617,687 - -0.0 4,617,724 - +1.3 4,617,782 + -0.4 4,617,948 + HSERO_RS20120 0.24 +1.4 4,617,948 + HSERO_RS20120 0.24 +0.5 4,617,948 + HSERO_RS20120 0.24 +0.1 4,617,948 + HSERO_RS20120 0.24 -0.6 4,617,953 + HSERO_RS20120 0.24 -0.8 4,617,953 + HSERO_RS20120 0.24 +0.5 4,617,956 - HSERO_RS20120 0.25 -0.5 4,618,001 + HSERO_RS20120 0.30 -0.9 4,618,062 + HSERO_RS20120 0.37 +0.1
Or see this region's nucleotide sequence