Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18950

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
4,348,235	-		HSERO_RS18945	0.17	-0.9
4,348,295	-		HSERO_RS18945	0.24	-0.1
4,348,383	+		HSERO_RS18945	0.35	-0.8
4,348,383	+		HSERO_RS18945	0.35	+0.2
4,348,526	-		HSERO_RS18945	0.52	-0.2
4,348,535	-		HSERO_RS18945	0.53	+0.0
4,348,566	+		HSERO_RS18945	0.56	-0.3
4,348,745	+		HSERO_RS18945	0.77	-0.1
4,348,753	-		HSERO_RS18945	0.78	-1.7
4,348,763	-		HSERO_RS18945	0.79	+0.1
4,348,768	-		HSERO_RS18945	0.80	-0.1
4,348,954	-				-1.1
4,348,954	-				-0.4
4,348,954	-				+0.8
4,349,164	+		HSERO_RS18950	0.20	-0.6
4,349,284	+		HSERO_RS18950	0.33	+0.1
4,349,401	+		HSERO_RS18950	0.46	+0.0
4,349,458	+		HSERO_RS18950	0.53	+0.4
4,349,489	+		HSERO_RS18950	0.56	+0.1
4,349,533	+		HSERO_RS18950	0.61	-0.8
4,349,538	+		HSERO_RS18950	0.62	-1.0
4,349,551	-				-0.9
4,349,695	-		HSERO_RS18950	0.80	-0.7
4,349,798	-				-0.4
4,349,886	+				-1.1
4,350,199	-		HSERO_RS18955	0.11	-0.4
4,350,485	-		HSERO_RS18955	0.33	+0.2
4,350,633	-		HSERO_RS18955	0.44	+0.2
4,350,680	+		HSERO_RS18955	0.48	-1.1
4,350,818	-		HSERO_RS18955	0.58	-0.5
4,350,867	+				-0.5