Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17545

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
4,022,012	-		HSERO_RS17535	0.47	-0.3
4,022,024	-		HSERO_RS17535	0.51	+1.4
4,022,166	+				-1.8
4,022,268	+				-0.5
4,022,268	+				+0.1
4,022,268	+				+0.3
4,022,276	-				+0.0
4,022,276	-				-0.5
4,022,276	-				+0.8
4,022,276	-				-0.5
4,022,276	-				-0.9
4,022,276	-				-0.2
4,022,341	+		HSERO_RS17540	0.14	+0.4
4,022,350	+		HSERO_RS17540	0.15	-0.5
4,022,351	+		HSERO_RS17540	0.15	-0.2
4,022,359	-		HSERO_RS17540	0.17	-0.8
4,022,360	-		HSERO_RS17540	0.17	+1.2
4,022,360	-		HSERO_RS17540	0.17	-0.9
4,022,406	-		HSERO_RS17540	0.23	-0.6
4,022,447	-		HSERO_RS17540	0.29	+0.1
4,022,496	-		HSERO_RS17540	0.36	-0.1
4,022,500	-		HSERO_RS17540	0.36	-1.0
4,022,599	-		HSERO_RS17540	0.50	+0.7
4,022,619	-		HSERO_RS17540	0.53	-0.3
4,022,619	-		HSERO_RS17540	0.53	-0.2
4,022,623	+		HSERO_RS17540	0.53	-0.3
4,022,754	+		HSERO_RS17540	0.71	-0.9
4,022,756	-		HSERO_RS17540	0.72	-1.5
4,022,914	-				-0.1
4,022,916	-				+1.1
4,023,050	+				-0.3
4,023,071	+				-0.3
4,023,071	+				+0.4
4,023,071	+				+0.3
4,023,079	-		HSERO_RS17545	0.11	-0.1
4,023,079	-		HSERO_RS17545	0.11	+0.1
4,023,079	-		HSERO_RS17545	0.11	-0.3
4,023,130	+		HSERO_RS17545	0.19	+1.5
4,023,137	-		HSERO_RS17545	0.20	-0.5
4,023,282	+		HSERO_RS17545	0.42	-0.0
4,023,290	-				-1.1
4,023,290	-		HSERO_RS17545	0.43	-1.0
4,023,293	+		HSERO_RS17545	0.44	-0.2
4,023,322	+		HSERO_RS17545	0.48	-0.6
4,023,374	+		HSERO_RS17545	0.56	+0.2
4,023,374	+		HSERO_RS17545	0.56	-1.2
4,023,376	+		HSERO_RS17545	0.56	-0.3
4,023,489	-		HSERO_RS17545	0.74	-1.0
4,023,618	-				-0.3
4,023,691	+				+0.2
4,023,699	-				+0.4
4,023,754	+				-0.4
4,023,754	+				+0.2
4,023,775	+		HSERO_RS17550	0.11	-0.2
4,023,783	-		HSERO_RS17550	0.12	-0.4
4,023,896	-		HSERO_RS17550	0.27	+1.6
4,023,932	-		HSERO_RS17550	0.32	-0.5
4,024,037	-		HSERO_RS17550	0.46	+1.0
4,024,172	-		HSERO_RS17550	0.64	-0.1
4,024,197	+		HSERO_RS17550	0.67	-1.4
4,024,363	-		HSERO_RS17550	0.89	+0.9
4,024,457	-				-0.1
4,024,479	+				+0.4
4,024,481	+				-1.4
4,024,583	+				-2.3