Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01470 and HSERO_RS01475 are separated by 128 nucleotides HSERO_RS01475 and HSERO_RS01480 are separated by 216 nucleotides
HSERO_RS01470: HSERO_RS01470 - LysR family transcriptional regulator, at 316,658 to 317,548
_RS01470
HSERO_RS01475: HSERO_RS01475 - oxidoreductase, at 317,677 to 318,423
_RS01475
HSERO_RS01480: HSERO_RS01480 - heat-shock protein, at 318,640 to 319,896
_RS01480
Position (kb) 317
318
319 Strain fitness (log2 ratio) -2
-1
0
1
2 at 316.770 kb on + strand, within HSERO_RS01470 at 316.938 kb on + strand, within HSERO_RS01470 at 316.946 kb on - strand, within HSERO_RS01470 at 317.195 kb on - strand, within HSERO_RS01470 at 317.420 kb on - strand, within HSERO_RS01470 at 317.511 kb on + strand at 317.520 kb on + strand at 317.676 kb on - strand at 317.982 kb on + strand, within HSERO_RS01475 at 317.987 kb on + strand, within HSERO_RS01475 at 318.021 kb on + strand, within HSERO_RS01475 at 318.022 kb on - strand, within HSERO_RS01475 at 318.036 kb on + strand, within HSERO_RS01475 at 318.181 kb on - strand, within HSERO_RS01475 at 318.292 kb on + strand, within HSERO_RS01475 at 318.351 kb on - strand at 318.391 kb on + strand at 318.502 kb on + strand at 318.596 kb on + strand at 318.604 kb on - strand at 318.656 kb on - strand at 318.761 kb on - strand at 318.779 kb on + strand, within HSERO_RS01480 at 318.811 kb on - strand, within HSERO_RS01480 at 318.856 kb on + strand, within HSERO_RS01480 at 319.000 kb on - strand, within HSERO_RS01480 at 319.003 kb on + strand, within HSERO_RS01480 at 319.011 kb on - strand, within HSERO_RS01480 at 319.334 kb on - strand, within HSERO_RS01480 at 319.334 kb on - strand, within HSERO_RS01480 at 319.375 kb on + strand, within HSERO_RS01480 at 319.421 kb on + strand, within HSERO_RS01480
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 316,770 + HSERO_RS01470 0.13 -0.5 316,938 + HSERO_RS01470 0.31 -0.3 316,946 - HSERO_RS01470 0.32 -0.4 317,195 - HSERO_RS01470 0.60 -0.4 317,420 - HSERO_RS01470 0.86 -0.7 317,511 + +0.7 317,520 + -2.5 317,676 - +1.4 317,982 + HSERO_RS01475 0.41 -0.3 317,987 + HSERO_RS01475 0.41 -0.1 318,021 + HSERO_RS01475 0.46 +0.4 318,022 - HSERO_RS01475 0.46 -0.2 318,036 + HSERO_RS01475 0.48 +1.0 318,181 - HSERO_RS01475 0.67 +0.2 318,292 + HSERO_RS01475 0.82 -0.3 318,351 - +0.8 318,391 + +1.8 318,502 + +0.2 318,596 + -0.1 318,604 - -0.9 318,656 - +0.8 318,761 - +0.3 318,779 + HSERO_RS01480 0.11 -0.2 318,811 - HSERO_RS01480 0.14 -1.0 318,856 + HSERO_RS01480 0.17 -0.3 319,000 - HSERO_RS01480 0.29 +0.0 319,003 + HSERO_RS01480 0.29 +0.1 319,011 - HSERO_RS01480 0.30 -0.6 319,334 - HSERO_RS01480 0.55 +1.3 319,334 - HSERO_RS01480 0.55 +0.7 319,375 + HSERO_RS01480 0.58 -0.3 319,421 + HSERO_RS01480 0.62 -1.4
Or see this region's nucleotide sequence