Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18420

Experiment: Benzalkonium Chloride 0.006ng/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18410 and BWI76_RS18415 overlap by 26 nucleotidesBWI76_RS18415 and BWI76_RS18420 overlap by 20 nucleotidesBWI76_RS18420 and BWI76_RS18425 are separated by 17 nucleotidesBWI76_RS18425 and BWI76_RS18430 are separated by 42 nucleotides BWI76_RS18410: BWI76_RS18410 - drug/metabolite exporter YedA, at 3,820,405 to 3,821,316 _RS18410 BWI76_RS18415: BWI76_RS18415 - very short patch repair endonuclease, at 3,821,291 to 3,821,785 _RS18415 BWI76_RS18420: BWI76_RS18420 - DNA (cytosine-5-)-methyltransferase, at 3,821,766 to 3,823,238 _RS18420 BWI76_RS18425: BWI76_RS18425 - phosphohydrolase, at 3,823,256 to 3,823,951 _RS18425 BWI76_RS18430: BWI76_RS18430 - hypothetical protein, at 3,823,994 to 3,824,275 _RS18430 Position (kb) 3821 3822 3823 3824Strain fitness (log2 ratio) -2 -1 0 1at 3820.848 kb on + strand, within BWI76_RS18410at 3820.848 kb on + strand, within BWI76_RS18410at 3820.848 kb on + strand, within BWI76_RS18410at 3820.848 kb on + strand, within BWI76_RS18410at 3821.203 kb on + strand, within BWI76_RS18410at 3821.326 kb on + strandat 3821.438 kb on + strand, within BWI76_RS18415at 3821.517 kb on + strand, within BWI76_RS18415at 3821.895 kb on + strandat 3822.162 kb on + strand, within BWI76_RS18420at 3822.213 kb on - strand, within BWI76_RS18420at 3822.238 kb on + strand, within BWI76_RS18420at 3822.273 kb on + strand, within BWI76_RS18420at 3822.299 kb on + strand, within BWI76_RS18420at 3822.317 kb on + strand, within BWI76_RS18420at 3822.344 kb on + strand, within BWI76_RS18420at 3822.431 kb on + strand, within BWI76_RS18420at 3822.439 kb on - strand, within BWI76_RS18420at 3822.713 kb on - strand, within BWI76_RS18420at 3822.788 kb on - strand, within BWI76_RS18420at 3823.001 kb on + strand, within BWI76_RS18420at 3823.266 kb on + strandat 3823.267 kb on + strandat 3823.274 kb on - strandat 3823.323 kb on + strandat 3823.335 kb on + strand, within BWI76_RS18425at 3823.343 kb on - strand, within BWI76_RS18425at 3823.835 kb on + strand, within BWI76_RS18425at 3823.972 kb on - strandat 3823.979 kb on - strandat 3823.994 kb on - strandat 3824.162 kb on - strand, within BWI76_RS18430at 3824.173 kb on + strand, within BWI76_RS18430at 3824.181 kb on - strand, within BWI76_RS18430at 3824.196 kb on - strand, within BWI76_RS18430

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.006ng/ml
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3,820,848 + BWI76_RS18410 0.49 -0.1
3,820,848 + BWI76_RS18410 0.49 +0.3
3,820,848 + BWI76_RS18410 0.49 +0.0
3,820,848 + BWI76_RS18410 0.49 -0.2
3,821,203 + BWI76_RS18410 0.88 -0.2
3,821,326 + -1.2
3,821,438 + BWI76_RS18415 0.30 +0.0
3,821,517 + BWI76_RS18415 0.46 -0.0
3,821,895 + -0.8
3,822,162 + BWI76_RS18420 0.27 -0.8
3,822,213 - BWI76_RS18420 0.30 -1.6
3,822,238 + BWI76_RS18420 0.32 -1.8
3,822,273 + BWI76_RS18420 0.34 -1.4
3,822,299 + BWI76_RS18420 0.36 -2.0
3,822,317 + BWI76_RS18420 0.37 -0.8
3,822,344 + BWI76_RS18420 0.39 -1.1
3,822,431 + BWI76_RS18420 0.45 -0.9
3,822,439 - BWI76_RS18420 0.46 +0.1
3,822,713 - BWI76_RS18420 0.64 -1.0
3,822,788 - BWI76_RS18420 0.69 -0.8
3,823,001 + BWI76_RS18420 0.84 -1.9
3,823,266 + -0.2
3,823,267 + -0.0
3,823,274 - +0.0
3,823,323 + -0.3
3,823,335 + BWI76_RS18425 0.11 -0.4
3,823,343 - BWI76_RS18425 0.12 -0.4
3,823,835 + BWI76_RS18425 0.83 +0.5
3,823,972 - -0.6
3,823,979 - +0.6
3,823,994 - +0.8
3,824,162 - BWI76_RS18430 0.60 +0.8
3,824,173 + BWI76_RS18430 0.63 +0.1
3,824,181 - BWI76_RS18430 0.66 +0.4
3,824,196 - BWI76_RS18430 0.72 +1.3

Or see this region's nucleotide sequence