Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12485

Experiment: Benzalkonium Chloride 0.006ng/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12480 and BWI76_RS12485 are separated by 244 nucleotidesBWI76_RS12485 and BWI76_RS12490 are separated by 116 nucleotides BWI76_RS12480: BWI76_RS12480 - TIGR01620 family protein, at 2,606,057 to 2,607,118 _RS12480 BWI76_RS12485: BWI76_RS12485 - TyrR family transcriptional regulator, at 2,607,363 to 2,608,904 _RS12485 BWI76_RS12490: BWI76_RS12490 - AbrB family transcriptional regulator, at 2,609,021 to 2,610,076 _RS12490 Position (kb) 2607 2608 2609Strain fitness (log2 ratio) -1 0 1at 2606.447 kb on - strand, within BWI76_RS12480at 2606.567 kb on + strand, within BWI76_RS12480at 2606.585 kb on - strand, within BWI76_RS12480at 2606.804 kb on - strand, within BWI76_RS12480at 2606.925 kb on + strand, within BWI76_RS12480at 2607.146 kb on + strandat 2607.149 kb on - strandat 2607.351 kb on - strandat 2608.100 kb on - strand, within BWI76_RS12485at 2608.657 kb on + strand, within BWI76_RS12485at 2608.657 kb on + strand, within BWI76_RS12485at 2608.820 kb on + strandat 2608.855 kb on + strandat 2608.863 kb on - strandat 2608.878 kb on - strandat 2609.419 kb on + strand, within BWI76_RS12490at 2609.567 kb on - strand, within BWI76_RS12490at 2609.661 kb on + strand, within BWI76_RS12490at 2609.745 kb on - strand, within BWI76_RS12490

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.006ng/ml
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2,606,447 - BWI76_RS12480 0.37 +1.2
2,606,567 + BWI76_RS12480 0.48 +0.7
2,606,585 - BWI76_RS12480 0.50 +1.0
2,606,804 - BWI76_RS12480 0.70 +0.2
2,606,925 + BWI76_RS12480 0.82 -0.3
2,607,146 + +0.6
2,607,149 - +0.2
2,607,351 - -1.0
2,608,100 - BWI76_RS12485 0.48 -1.1
2,608,657 + BWI76_RS12485 0.84 -0.9
2,608,657 + BWI76_RS12485 0.84 -1.4
2,608,820 + -0.7
2,608,855 + -1.1
2,608,863 - -0.8
2,608,878 - -0.3
2,609,419 + BWI76_RS12490 0.38 -0.3
2,609,567 - BWI76_RS12490 0.52 -0.4
2,609,661 + BWI76_RS12490 0.61 -0.1
2,609,745 - BWI76_RS12490 0.69 -0.5

Or see this region's nucleotide sequence