Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23655 and HSERO_RS23660 overlap by 4 nucleotides HSERO_RS23660 and HSERO_RS23665 are separated by 182 nucleotides HSERO_RS23665 and HSERO_RS23670 are separated by 258 nucleotides HSERO_RS23670 and HSERO_RS23675 are separated by 2 nucleotides
HSERO_RS23655: HSERO_RS23655 - phosphonate ABC transporter permease, at 5,422,466 to 5,423,269
_RS23655
HSERO_RS23660: HSERO_RS23660 - phosphonate ABC transporter ATP-binding protein, at 5,423,266 to 5,424,036
_RS23660
HSERO_RS23665: HSERO_RS23665 - phosphonate ABC transporter substrate-binding protein, at 5,424,219 to 5,425,208
_RS23665
HSERO_RS23670: HSERO_RS23670 - chemotaxis protein CheY, at 5,425,467 to 5,426,153
_RS23670
HSERO_RS23675: HSERO_RS23675 - histidine kinase, at 5,426,156 to 5,427,559
_RS23675
Position (kb) 5424
5425
5426 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5423.296 kb on - strand at 5423.386 kb on - strand, within HSERO_RS23660 at 5423.613 kb on + strand, within HSERO_RS23660 at 5423.629 kb on - strand, within HSERO_RS23660 at 5423.639 kb on - strand, within HSERO_RS23660 at 5423.703 kb on + strand, within HSERO_RS23660 at 5423.970 kb on + strand at 5424.034 kb on - strand at 5424.266 kb on - strand at 5424.289 kb on - strand at 5424.578 kb on + strand, within HSERO_RS23665 at 5424.585 kb on - strand, within HSERO_RS23665 at 5424.586 kb on - strand, within HSERO_RS23665 at 5424.586 kb on - strand, within HSERO_RS23665 at 5424.747 kb on - strand, within HSERO_RS23665 at 5424.763 kb on - strand, within HSERO_RS23665 at 5424.775 kb on - strand, within HSERO_RS23665 at 5425.090 kb on - strand, within HSERO_RS23665 at 5425.199 kb on - strand at 5425.258 kb on + strand at 5425.573 kb on - strand, within HSERO_RS23670 at 5425.654 kb on - strand, within HSERO_RS23670 at 5425.927 kb on + strand, within HSERO_RS23670 at 5426.055 kb on - strand, within HSERO_RS23670 at 5426.186 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 5,423,296 - -0.2 5,423,386 - HSERO_RS23660 0.16 +0.6 5,423,613 + HSERO_RS23660 0.45 -0.3 5,423,629 - HSERO_RS23660 0.47 +0.7 5,423,639 - HSERO_RS23660 0.48 +0.3 5,423,703 + HSERO_RS23660 0.57 -0.1 5,423,970 + +0.4 5,424,034 - +0.3 5,424,266 - -0.5 5,424,289 - -0.4 5,424,578 + HSERO_RS23665 0.36 +0.4 5,424,585 - HSERO_RS23665 0.37 +0.6 5,424,586 - HSERO_RS23665 0.37 +2.9 5,424,586 - HSERO_RS23665 0.37 +1.6 5,424,747 - HSERO_RS23665 0.53 -0.2 5,424,763 - HSERO_RS23665 0.55 -0.1 5,424,775 - HSERO_RS23665 0.56 -2.0 5,425,090 - HSERO_RS23665 0.88 +0.4 5,425,199 - +0.5 5,425,258 + +0.4 5,425,573 - HSERO_RS23670 0.15 +0.0 5,425,654 - HSERO_RS23670 0.27 -1.0 5,425,927 + HSERO_RS23670 0.67 -0.7 5,426,055 - HSERO_RS23670 0.86 +0.0 5,426,186 + -0.1
Or see this region's nucleotide sequence