Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21985

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
5,029,133	+		HSERO_RS21980	0.28	-0.4
5,029,253	+		HSERO_RS21980	0.37	+0.5
5,029,267	-		HSERO_RS21980	0.38	+0.1
5,029,298	-		HSERO_RS21980	0.41	+0.7
5,029,347	-		HSERO_RS21980	0.44	+0.1
5,029,468	+		HSERO_RS21980	0.53	+0.4
5,029,667	-		HSERO_RS21980	0.68	+0.3
5,029,703	+		HSERO_RS21980	0.71	-0.7
5,029,711	-		HSERO_RS21980	0.72	-0.1
5,029,998	+				+1.1
5,030,057	-				-2.6
5,030,093	+				+1.8
5,030,238	-		HSERO_RS21985	0.23	+0.1
5,030,511	+		HSERO_RS21985	0.65	-0.6
5,030,582	+		HSERO_RS21985	0.76	-2.2
5,030,613	-		HSERO_RS21985	0.80	+1.5
5,030,658	+		HSERO_RS21985	0.87	-0.7
5,030,658	+		HSERO_RS21985	0.87	-0.6
5,030,666	-		HSERO_RS21985	0.88	-0.2
5,030,686	+				+0.5
5,030,854	+		HSERO_RS21990	0.46	-0.0
5,030,967	+				+0.3
5,030,975	-				-0.1