Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21340 and HSERO_RS21345 are separated by 82 nucleotides HSERO_RS21345 and HSERO_RS21350 are separated by 1 nucleotides HSERO_RS21350 and HSERO_RS21355 are separated by 127 nucleotides
HSERO_RS21340: HSERO_RS21340 - septum formation inhibitor protein, at 4,885,644 to 4,886,438
_RS21340
HSERO_RS21345: HSERO_RS21345 - cell division inhibitor MinD, at 4,886,521 to 4,887,336
_RS21345
HSERO_RS21350: HSERO_RS21350 - cell division topological specificity factor MinE, at 4,887,338 to 4,887,607
_RS21350
HSERO_RS21355: HSERO_RS21355 - transcriptional regulator, at 4,887,735 to 4,888,436
_RS21355
Position (kb) 4886
4887
4888 Strain fitness (log2 ratio) -2
-1
0
1 at 4885.796 kb on + strand, within HSERO_RS21340 at 4885.862 kb on + strand, within HSERO_RS21340 at 4885.870 kb on - strand, within HSERO_RS21340 at 4885.919 kb on - strand, within HSERO_RS21340 at 4886.483 kb on + strand at 4886.495 kb on + strand at 4886.654 kb on + strand, within HSERO_RS21345 at 4886.695 kb on + strand, within HSERO_RS21345 at 4886.732 kb on + strand, within HSERO_RS21345 at 4886.951 kb on + strand, within HSERO_RS21345 at 4887.823 kb on + strand, within HSERO_RS21355 at 4887.831 kb on - strand, within HSERO_RS21355 at 4887.990 kb on + strand, within HSERO_RS21355 at 4887.998 kb on - strand, within HSERO_RS21355 at 4888.040 kb on + strand, within HSERO_RS21355 at 4888.080 kb on + strand, within HSERO_RS21355 at 4888.289 kb on + strand, within HSERO_RS21355
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 4,885,796 + HSERO_RS21340 0.19 +0.6 4,885,862 + HSERO_RS21340 0.27 -1.3 4,885,870 - HSERO_RS21340 0.28 -1.0 4,885,919 - HSERO_RS21340 0.35 -0.2 4,886,483 + +0.5 4,886,495 + -0.7 4,886,654 + HSERO_RS21345 0.16 -0.9 4,886,695 + HSERO_RS21345 0.21 -0.6 4,886,732 + HSERO_RS21345 0.26 -2.1 4,886,951 + HSERO_RS21345 0.53 -2.3 4,887,823 + HSERO_RS21355 0.13 +0.2 4,887,831 - HSERO_RS21355 0.14 -2.3 4,887,990 + HSERO_RS21355 0.36 -0.8 4,887,998 - HSERO_RS21355 0.37 -0.3 4,888,040 + HSERO_RS21355 0.43 -0.3 4,888,080 + HSERO_RS21355 0.49 +0.8 4,888,289 + HSERO_RS21355 0.79 -0.5
Or see this region's nucleotide sequence