Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17240

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
3,947,190	-				-0.5
3,947,314	+				+0.1
3,947,400	+		HSERO_RS17235	0.19	-0.1
3,947,407	-		HSERO_RS17235	0.20	-1.7
3,947,429	-		HSERO_RS17235	0.23	-0.1
3,947,485	+		HSERO_RS17235	0.30	+0.5
3,947,574	-				-1.0
3,947,689	-		HSERO_RS17235	0.56	-0.3
3,947,705	-		HSERO_RS17235	0.58	-0.6
3,947,799	-		HSERO_RS17235	0.70	+0.9
3,947,902	+		HSERO_RS17235	0.83	-0.3
3,947,917	+		HSERO_RS17235	0.85	+0.7
3,947,934	-		HSERO_RS17235	0.87	-0.1
3,947,975	-				+0.0
3,948,034	-				+1.2
3,948,105	+				+0.5
3,948,105	+				-0.2
3,948,105	+				-0.1
3,948,113	-				+0.6
3,948,113	-				-0.2
3,948,209	+				+0.2
3,948,516	-		HSERO_RS17240	0.42	+0.0
3,948,531	+		HSERO_RS17240	0.44	+0.9
3,948,531	+		HSERO_RS17240	0.44	-0.1
3,948,553	-		HSERO_RS17240	0.46	+0.7
3,948,616	-		HSERO_RS17240	0.53	+0.7
3,948,654	+		HSERO_RS17240	0.57	-0.1
3,948,874	+		HSERO_RS17240	0.80	-0.1
3,948,935	-		HSERO_RS17240	0.87	+1.0
3,949,006	-				-0.3
3,949,074	-				+0.9
3,949,074	-				+0.1
3,949,079	-				-0.6