Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17190

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
3,935,865	+		HSERO_RS17185	0.51	-0.2
3,935,898	+		HSERO_RS17185	0.52	-0.3
3,935,906	-		HSERO_RS17185	0.53	+0.0
3,935,954	+		HSERO_RS17185	0.56	-0.1
3,936,246	+		HSERO_RS17185	0.73	-0.1
3,936,247	-		HSERO_RS17185	0.73	-0.1
3,936,254	-		HSERO_RS17185	0.73	+0.7
3,936,362	+		HSERO_RS17185	0.80	-0.6
3,936,690	-				+0.4
3,936,755	-				+0.5
3,936,840	+				-1.7
3,936,840	+				-0.0
3,936,949	+		HSERO_RS17190	0.49	+0.3
3,937,001	+		HSERO_RS17190	0.70	+0.1
3,937,007	-		HSERO_RS17190	0.73	+1.1
3,937,007	-		HSERO_RS17190	0.73	+0.8
3,937,040	-		HSERO_RS17190	0.87	+0.2
3,937,063	-				-0.9
3,937,088	-				-0.5
3,937,177	+				+0.2
3,937,255	+				-2.0
3,937,269	-				+0.7
3,937,324	+				-0.0
3,937,324	+				-0.1
3,937,376	+				-1.1
3,937,521	-		HSERO_RS17195	0.13	-0.2
3,937,631	-		HSERO_RS17195	0.19	-0.3
3,937,711	-		HSERO_RS17195	0.24	-0.2
3,937,716	-		HSERO_RS17195	0.24	+0.9
3,937,769	+		HSERO_RS17195	0.27	-2.4
3,937,831	-		HSERO_RS17195	0.31	-0.5
3,938,003	+		HSERO_RS17195	0.40	+1.0