Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12280

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
2,786,561	+		HSERO_RS12270	0.78	-0.8
2,786,626	-		HSERO_RS12270	0.87	-1.4
2,786,685	-				-0.4
2,786,781	+				+0.6
2,786,878	-		HSERO_RS12275	0.22	+0.5
2,786,881	-		HSERO_RS12275	0.22	-0.4
2,786,883	-		HSERO_RS12275	0.22	-0.1
2,786,977	-		HSERO_RS12275	0.35	+0.7
2,787,045	-				+1.1
2,787,210	-		HSERO_RS12275	0.65	-0.7
2,787,333	+		HSERO_RS12275	0.81	+1.4
2,787,333	+		HSERO_RS12275	0.81	-0.0
2,787,448	-				+0.9
2,787,534	-				+0.7
2,787,556	-				+0.2
2,787,864	-		HSERO_RS12280	0.21	+0.5
2,788,099	-		HSERO_RS12280	0.33	-0.5
2,788,373	-		HSERO_RS12280	0.48	-0.1
2,788,836	+		HSERO_RS12280	0.72	-0.2
2,788,878	-		HSERO_RS12280	0.75	+1.0
2,789,454	-				+0.4
2,789,507	-				+0.3
2,789,535	-		HSERO_RS12285	0.11	-1.0
2,789,641	+		HSERO_RS12285	0.20	-0.6
2,789,733	-		HSERO_RS12285	0.27	-0.5
2,789,750	+		HSERO_RS12285	0.28	+0.8
2,789,773	-		HSERO_RS12285	0.30	-0.7
2,789,825	-		HSERO_RS12285	0.35	+0.3
2,790,064	+		HSERO_RS12285	0.54	+0.9
2,790,259	-		HSERO_RS12285	0.70	+1.2